StmStr StmStr_E_0to1 KAUST Clara Stanschewski SdAvgRed_Comp_rgb SdAvgRed KAUST Clara Stanschewski Clara Stanschewski StmLodg StmLodg_E_1to9 KAUST GrStg_E_BBCH GrStg KAUST Clara Stanschewski SdPrm_Comp_mm KAUST SdPrm Clara Stanschewski PcleLfs KAUST Clara Stanschewski PcleLfs_E_1to7 entity KAUST PlotCov_E_1to9 Clara Stanschewski PlotCov Clara Stanschewski LfMgn LfMgn_E_1to5 KAUST KAUST Clara Stanschewski StmCol StmCol_E_4to15 Clara Stanschewski PcleDen_E_1to7 KAUST PcleDen PcleCol_E_4to16 Clara Stanschewski PcleCol KAUST StmLy StmLy_E_1to9 KAUST Clara Stanschewski SdWpPt_C_g KAUST SdWpPt Clara Stanschewski KAUST PltNoHv Clara Stanschewski PltNoHv_Ct_plant KAUST Clara Stanschewski SdWRepPt_M_g SdWRepPt SdWpPlot KAUST Clara Stanschewski SdWpPlot_M_g KAUST GH_E_1to7 Clara Stanschewski GH KAUST SdAvgGreen_Comp_rgb SdAvgGreen Clara Stanschewski PtHt_M_cm Clara Stanschewski PtHt KAUST Clara Stanschewski Brnch Brnch_E_1to7 KAUST KAUST StmDiaBse Clara Stanschewski StmDiaBse_M_mm SdHlW_M_g KAUST Clara Stanschewski SdHlW PltNoHvRp_Ct_plant PltNoHvRp KAUST Clara Stanschewski Clara Stanschewski StmAng StmAng_E_1to7 KAUST AxlPig_E_0to1 KAUST AxlPig Clara Stanschewski HI_C_pct KAUST Clara Stanschewski HI AGDBM AGDBM_M_g KAUST Clara Stanschewski KAUST StmLfShp_E_1to2 Clara Stanschewski StmLfShp KAUST StmBrk_E_1to9 Clara Stanschewski StmBrk Clara Stanschewski PlotHomo PlotHomo_E_1to7 KAUST SigPcle_Ct_panicle Clara Stanschewski SigPcle KAUST KAUST StmDiaPcle_M_mm Clara Stanschewski StmDiaPcle KAUST Clara Stanschewski SdAvgBlue SdAvgBlue_Comp_rgb KAUST Clara Stanschewski SdSht_E_1to7 SdSht TGW TGW_M_g KAUST Clara Stanschewski PcleAng_E_1to7 PcleAng KAUST Clara Stanschewski SdA_Comp_mm Clara Stanschewski SdA KAUST PcleLng KAUST Clara Stanschewski PcleLng_M_cm KAUST PcleShp Clara Stanschewski PcleShp_E_1to3 Clara Stanschewski BGDBM_M_g BGDBM KAUST SdGerm SdGerm_M_pct KAUST Clara Stanschewski attribute Quinoa ontology acronym Panicle The angle at which the majority of panicle axes are leaning, measured between an upright panicle on the verticle and a panicle pointing towards the ground PcleAng Axis angle Panicle axis angle Seed germination rate measurement None None Number of significant panicles counting Leaf margin 1-3-5 Panicle density 1-3-5-7 Panicle color estimation None None Seed average green color computation Seed shattering SdSht Grain persistence in the plant at physiological maturity. Assessing how easy seeds fall off the panicle upon light touch: 1 = No seeds falling to 7 = a lot of seeds falling Seed Shattering Stem angle 1-3-5-7 Presence (1) absence (0) scoring of pigmented axils Axil AxlPig Axil pigmentation Pigmentation Panicle axis angle 1-3-5-7 Stem striae 0-1 Stem leaf shape Leaf shape StmLfShp Stem Leaves of the stem are categorized into two groups: rhomboidal (1) and triangular (2) Stem leaf shape 1-2 None Seed average blue color computation Phenological growth stage; very important to record at mature phenotyping Plant Growth stage Growth stage GrStg None Stem angle estimation Classified into one of the three categories: glomerulate, intermediate, or amarantiform Panicle shape PcleShp Panicle Shape Seed yield for representative plants measurement None The angle at which the majority of plants are leaning, measured between the vertical axis and the horizontal axis Stem Stem angle StmAng Angle None Plant branchiness estimation None Seed hectoliter weight measurement None Number of representative plants harvested counting None Seed yield per plot measurement BBCH None Stem diameter near plant base measurement Length of the primary panicle measured with the same stick. Measured from the base of the panicle to the tip Panicle Length Panicle length PcleLng average red color Seed SdAvgRed Seed average red color Numerical seed color red value, RGB R Component from image analysis Seed mass of approximately four representative plants that were harvested from the center of the plot (seed should be dried to constant weight) SdWRepPt Seed Seed yield for representative plants Yield of representative plants Panicle axis angle estimation None Seed hectoliter weight Seed Hectoliter weight SdHlW Hectoliter weight, or specific weight of seeds: Estimation of density, determined by weighing all seeds fitting into a 100 ml volume None Seed average area computation Number of plants harvested per plot Plot Plants harvested PltNoHv Total number of plants that were harvested of the plot. Stem Presence (1) absence (0) scoring of stem streaks or stripes Stem striae Striae StmStr Seed yield per plot SdWpPlot Harvesting the panicles remaining per plot while excluding borders, and adding the weight to that from the four representative plants, seed dried in oven to constant weight Seed Yield total None Plant below-ground dry biomass measurement Seed average perimeter computation None Panicle Scored from 1 = no leaves to 7 = many leaves PcleLfs Leafiness Panicle leafiness Plot population homogeneity 1-3-5-7 Seed average perimeter SdPrm Average perimeter of the seeds from image analysis Seed average perimeter g Percentage of the plot covered, 1 = poor to 7 = good establishment Plot coverage PlotCov Plot Coverage Stem lying incidence estimation None Color Stem color Categorized into green (13), red (4), or no pigmentation (15) Stem StmCol Four categories of growth habit described in images on the scoring card. Here the focus lies on whether branching is present from the base of the plant and if a main inflorescence can be identified Plant growth habit Plant Growth habit GH Leaf margin estimation None mm Harvest index Havest index Yield/ above-ground biomass Plant HI Representative plants harvested Plot Number of representative plants harvested Count the number of plants that were harvested seperately from the majority of the plot, as representative plants. PltNoHvRp Seed average green color Numerical seed color green value, RGB G Component from image analysis SdAvgGreen average green color Seed Plot population homogeneity estimation None % cm None Axil pigmentation estimation Categorized according to the color scoring card PcleCol Panicle Color Panicle color Panicle leafiness 1-3-5-7 Seed Germination rate Tested in petri dishes (%) SdGerm Seed germination rate rgb Population homogeneity Plot Plot population homogeneity PlotHomo Judgment of homogeneity of the accession, 1 = homogeneous to 7 = mixed Stem breakage incidence estimation None Scored from 1 = lax (loose) with panicle axes easily visible to 7 = tight and compact panicles PcleDen Panicle density Density Panicle Plant growth habit 1-3-5-7 Thickness of the stem measured just underneath the main panicle StmDiaPcle Stem diameter under the panicle Diameter under the panicle Stem Plant branchiness 1-3-5-7 None Stem color estimation Stem color 13-4-15 If possible, root biomass could also be measured (especially when plants are growing in sandy soil) BGDBM Plant Plant below-ground dry biomass Below-ground dry biomass Stem Stem breakage incidence StmBrk Stems are broken or detached, assessing the percentage of the plot affected Breakage incidence Seed average red color computation None None Stem diameter under the panicle measurement Brnch Plant branchiness Score for the overall amount of side branches of representative plants in a plot, ignoring very small and spindly branches, ranging from 1 = no branches to 7 = bushy plant with many major lateral branches Branchiness Plant None Number of plants harvested per plot counting Plot coverage estimation None None Panicle shape estimation Margin Leaf margins are classified into 3 groups Leaf Leaf margin LfMgn Panicle length measurement None Plant AGDBM Cutting plants at the very base with secateurs and drying the entire above-ground section of the plant. Recording total dry weight and number of plants that make up total dry weight. Divide total weight with number of plants to give weight per plant Above-ground dry biomass Plant above-ground dry biomass None Plant above-ground dry biomass measurement Plant PtHt Plant height Height of the most representative plants of the plot, usually from the middle of the plot, measured with a long measuring stick from soil to the tip of the panicle. If more than one distinct phenotype is present, more than one plant may be recorded in a new row of the spreadsheet, with all phenotypes that are differing recorded separately Height method_of Stem Lying incidence Stem lying incidence Stem of the plant is not emerging straight up from the soil but has a kink at the base, growing along the ground before rising; assessing the percentage of the plot affected StmLy None Growth stage estimation Seed average blue color SdAvgBlue Seed average blue color Numerical seed color blue component, RGB B Component from image analysis Seed yield per plant Total harvested seed mass per plant may be calculated from number of plants harvested and the seed mass of all plants in the plot (SdWtpPlot/PltNoHv) Yield per plant Seed SdWpPt None Thousand Grain Weight measurement SigPcle Number of significant Number of significant panicles Panicle Count of the number of significant panicles, i.e., larger panicles, near the top of the plant, harvestable, that provide a major contribution to the seed harvested from the plant Plot coverage 1-3-5-7-9 Plant growth habit estimation None Harvest index computation None Panicle density estimation None Panicle color 13-16-4-7-15 None Stem striae estimation Stem lodging incidence 1-3-5-7-9 Average area of the seeds from image analysis Seed average area Seed average area SdA plant Thousand Grain Weight (TGW), the weight of 1000 seeds Thousand grain weight TGW Seed Thousand Grain Weight Stem StmLodg Lodging incidence Plants are prostrate, on or near the ground, with intact stems; assessing the percentage of the plot affected Stem lodging incidence None Stem leaf shape estimation Stem lying incidence 1-3-5-7-9 Axil pigmentation 0-1 None Seed yield per plant computation Seed shattering 1-3-5-7 panicle Stem lodging incidence estimation None Stem diameter near plant base StmDiaBse Thickness of the stem measured with calipers at the middle of the bottom third of the plant stem Stem Diameter at the plant base None Panicle leafiness estimation Panicle shape 1-3-5 Seed shattering estimation None Stem breakage incidence 1-3-5-7-9 Plant height measurement None variable_of scale_of