Clara Stanschewski StmBrk_E_1to9 StmBrk KAUST TGW_M_g KAUST TGW Clara Stanschewski StmDiaBse KAUST Clara Stanschewski StmDiaBse_M_mm KAUST StmLodg_E_1to9 Clara Stanschewski StmLodg PtHt_M_cm Clara Stanschewski KAUST PtHt KAUST PcleLfs_E_1to7 Clara Stanschewski PcleLfs KAUST StmDiaPcle Clara Stanschewski StmDiaPcle_M_mm attribute Clara Stanschewski SdWpPt SdWpPt_C_g KAUST KAUST SdAvgBlue Clara Stanschewski SdAvgBlue_Comp_rgb Clara Stanschewski PlotCov PlotCov_E_1to9 KAUST KAUST BGDBM Clara Stanschewski BGDBM_M_g Clara Stanschewski AGDBM_M_g KAUST AGDBM Clara Stanschewski PcleShp KAUST PcleShp_E_1to3 PcleDen_E_1to7 Clara Stanschewski PcleDen KAUST Clara Stanschewski KAUST HI HI_C_pct KAUST PcleLng_M_cm Clara Stanschewski PcleLng Clara Stanschewski SdSht SdSht_E_1to7 KAUST StmAng StmAng_E_1to7 Clara Stanschewski KAUST PcleAng Clara Stanschewski KAUST PcleAng_E_1to7 KAUST SdWpPlot_M_g SdWpPlot Clara Stanschewski SdGerm Clara Stanschewski SdGerm_M_pct KAUST KAUST Clara Stanschewski LfMgn LfMgn_E_1to5 KAUST Clara Stanschewski StmCol_E_4to15 StmCol StmLy Clara Stanschewski StmLy_E_1to9 KAUST Clara Stanschewski PltNoHv KAUST PltNoHv_Ct_plant PltNoHvRp KAUST PltNoHvRp_Ct_plant Clara Stanschewski KAUST GH_E_1to7 Clara Stanschewski GH SdPrm_Comp_mm Clara Stanschewski SdPrm KAUST KAUST GrStg GrStg_E_BBCH Clara Stanschewski KAUST SdA Clara Stanschewski SdA_Comp_mm Clara Stanschewski StmLfShp_E_1to2 KAUST StmLfShp entity KAUST AxlPig Clara Stanschewski AxlPig_E_0to1 SdHlW_M_g Clara Stanschewski SdHlW KAUST Clara Stanschewski SdWRepPt_M_g KAUST SdWRepPt StmStr Clara Stanschewski KAUST StmStr_E_0to1 Clara Stanschewski SigPcle_Ct_panicle SigPcle KAUST Clara Stanschewski SdAvgGreen SdAvgGreen_Comp_rgb KAUST PcleCol_E_4to16 Clara Stanschewski PcleCol KAUST Quinoa ontology PlotHomo_E_1to7 KAUST PlotHomo Clara Stanschewski SdAvgRed_Comp_rgb Clara Stanschewski SdAvgRed KAUST Clara Stanschewski Brnch_E_1to7 KAUST Brnch acronym Plot Count the number of plants that were harvested seperately from the majority of the plot, as representative plants. Representative plants harvested Number of representative plants harvested PltNoHvRp Seed average area SdA Seed Average area of the seeds from image analysis average area Panicle leafiness 1-3-5-7 Stem lying incidence 1-3-5-7-9 Leaf margin 1-3-5 rgb LfMgn Leaf Leaf margins are classified into 3 groups Leaf margin Margin plant Stem lodging incidence 1-3-5-7-9 cm None Stem color estimation SdAvgGreen Seed Numerical seed color green value, RGB G Component from image analysis average green color Seed average green color None Stem diameter under the panicle measurement Seed yield per plot measurement None SdPrm Seed average perimeter Seed average perimeter Average perimeter of the seeds from image analysis Length Panicle Length of the primary panicle measured with the same stick. Measured from the base of the panicle to the tip Panicle length PcleLng PcleLfs Scored from 1 = no leaves to 7 = many leaves Panicle leafiness Panicle Leafiness Stem lying incidence estimation None None Plot coverage estimation Presence (1) absence (0) scoring of pigmented axils Axil pigmentation Axil AxlPig Pigmentation Stem lodging incidence StmLodg Plants are prostrate, on or near the ground, with intact stems; assessing the percentage of the plot affected Stem Lodging incidence Stem leaf shape Stem StmLfShp Leaf shape Leaves of the stem are categorized into two groups: rhomboidal (1) and triangular (2) SdAvgBlue Seed average blue color Seed average blue color Numerical seed color blue component, RGB B Component from image analysis Plant above-ground dry biomass measurement None g None Seed yield for representative plants measurement Germination rate Seed germination rate SdGerm Seed Tested in petri dishes (%) None Panicle axis angle estimation Panicle density 1-3-5-7 Seed average green color computation None panicle Panicle color 13-16-4-7-15 Plot PlotHomo Plot population homogeneity Judgment of homogeneity of the accession, 1 = homogeneous to 7 = mixed Population homogeneity None Seed average area computation Plot coverage 1-3-5-7-9 Plant branchiness 1-3-5-7 mm Plant BGDBM Below-ground dry biomass Plant below-ground dry biomass If possible, root biomass could also be measured (especially when plants are growing in sandy soil) Seed mass of approximately four representative plants that were harvested from the center of the plot (seed should be dried to constant weight) Seed SdWRepPt Seed yield for representative plants Yield of representative plants None Seed yield per plant computation Plant growth habit 1-3-5-7 Stem striae estimation None Shattering Seed shattering Grain persistence in the plant at physiological maturity. Assessing how easy seeds fall off the panicle upon light touch: 1 = No seeds falling to 7 = a lot of seeds falling SdSht Seed None Thousand Grain Weight measurement Scored from 1 = lax (loose) with panicle axes easily visible to 7 = tight and compact panicles Panicle density Panicle PcleDen Density None Plant height measurement Plot population homogeneity 1-3-5-7 None Plant growth habit estimation Plant Yield/ above-ground biomass HI Havest index Harvest index None Panicle length measurement Plant below-ground dry biomass measurement None Branchiness Plant branchiness Plant Score for the overall amount of side branches of representative plants in a plot, ignoring very small and spindly branches, ranging from 1 = no branches to 7 = bushy plant with many major lateral branches Brnch PcleShp Shape Panicle shape Panicle Classified into one of the three categories: glomerulate, intermediate, or amarantiform Phenological growth stage; very important to record at mature phenotyping Growth stage Plant Growth stage GrStg Number of significant panicles counting None Plot Number of plants harvested per plot Plants harvested PltNoHv Total number of plants that were harvested of the plot. Stem color Color Stem StmCol Categorized into green (13), red (4), or no pigmentation (15) Seed Hectoliter weight, or specific weight of seeds: Estimation of density, determined by weighing all seeds fitting into a 100 ml volume Hectoliter weight Seed hectoliter weight SdHlW None Seed hectoliter weight measurement Stem angle 1-3-5-7 Stem breakage incidence Stem Stems are broken or detached, assessing the percentage of the plot affected StmBrk Breakage incidence PcleAng Panicle axis angle Panicle The angle at which the majority of panicle axes are leaning, measured between an upright panicle on the verticle and a panicle pointing towards the ground Axis angle None Seed shattering estimation Numerical seed color red value, RGB R Component from image analysis average red color Seed average red color Seed SdAvgRed Stem lying incidence Lying incidence StmLy Stem of the plant is not emerging straight up from the soil but has a kink at the base, growing along the ground before rising; assessing the percentage of the plot affected Stem Stem striae StmStr Striae Stem Presence (1) absence (0) scoring of stem streaks or stripes Panicle Color Categorized according to the color scoring card PcleCol Panicle color Axil pigmentation estimation None variable_of Plant GH Growth habit Plant growth habit Four categories of growth habit described in images on the scoring card. Here the focus lies on whether branching is present from the base of the plant and if a main inflorescence can be identified Count of the number of significant panicles, i.e., larger panicles, near the top of the plant, harvestable, that provide a major contribution to the seed harvested from the plant Number of significant SigPcle Number of significant panicles Panicle Plot population homogeneity estimation None None Panicle shape estimation Stem leaf shape estimation None Stem lodging incidence estimation None None Seed average red color computation None Number of representative plants harvested counting Seed germination rate measurement None Panicle shape 1-3-5 Number of plants harvested per plot counting None Stem diameter near plant base measurement None Seed average perimeter computation None None Harvest index computation Panicle leafiness estimation None Stem breakage incidence 1-3-5-7-9 StmAng Stem The angle at which the majority of plants are leaning, measured between the vertical axis and the horizontal axis Stem angle Angle Axil pigmentation 0-1 Seed shattering 1-3-5-7 Total harvested seed mass per plant may be calculated from number of plants harvested and the seed mass of all plants in the plot (SdWtpPlot/PltNoHv) Seed yield per plant Seed SdWpPt Yield per plant None Seed average blue color computation Leaf margin estimation None None Panicle density estimation BBCH Height of the most representative plants of the plot, usually from the middle of the plot, measured with a long measuring stick from soil to the tip of the panicle. If more than one distinct phenotype is present, more than one plant may be recorded in a new row of the spreadsheet, with all phenotypes that are differing recorded separately PtHt Plant Height Plant height Stem color 13-4-15 Thousand Grain Weight Thousand Grain Weight (TGW), the weight of 1000 seeds Thousand grain weight TGW Seed Stem striae 0-1 method_of StmDiaPcle Thickness of the stem measured just underneath the main panicle Stem Diameter under the panicle Stem diameter under the panicle Harvesting the panicles remaining per plot while excluding borders, and adding the weight to that from the four representative plants, seed dried in oven to constant weight Seed yield per plot Yield total SdWpPlot Seed % scale_of Plant branchiness estimation None Panicle axis angle 1-3-5-7 Cutting plants at the very base with secateurs and drying the entire above-ground section of the plant. Recording total dry weight and number of plants that make up total dry weight. Divide total weight with number of plants to give weight per plant AGDBM Plant above-ground dry biomass Above-ground dry biomass Plant Stem breakage incidence estimation None Stem leaf shape 1-2 None Stem angle estimation Stem Thickness of the stem measured with calipers at the middle of the bottom third of the plant stem StmDiaBse Diameter at the plant base Stem diameter near plant base Percentage of the plot covered, 1 = poor to 7 = good establishment Plot Plot coverage PlotCov Coverage None Panicle color estimation None Growth stage estimation