GrStg Clara Stanschewski GrStg_E_BBCH KAUST SdAvgGreen Clara Stanschewski KAUST SdAvgGreen_Comp_rgb Clara Stanschewski GH_E_1to7 KAUST GH SdWpPt_C_g Clara Stanschewski SdWpPt KAUST StmAng Clara Stanschewski KAUST StmAng_E_1to7 Clara Stanschewski KAUST StmCol_E_4to15 StmCol Clara Stanschewski StmBrk_E_1to9 StmBrk KAUST PcleAng_E_1to7 Clara Stanschewski PcleAng KAUST entity SdWRepPt SdWRepPt_M_g Clara Stanschewski KAUST StmDiaBse Clara Stanschewski KAUST StmDiaBse_M_mm SdAvgRed_Comp_rgb Clara Stanschewski KAUST SdAvgRed LfMgn_E_1to5 LfMgn Clara Stanschewski KAUST SigPcle Clara Stanschewski KAUST SigPcle_Ct_panicle KAUST PcleLng_M_cm PcleLng Clara Stanschewski StmLfShp_E_1to2 Clara Stanschewski StmLfShp KAUST Clara Stanschewski KAUST StmLodg_E_1to9 StmLodg SdA Clara Stanschewski KAUST SdA_Comp_mm KAUST PlotHomo PlotHomo_E_1to7 Clara Stanschewski StmStr StmStr_E_0to1 Clara Stanschewski KAUST AxlPig_E_0to1 AxlPig Clara Stanschewski KAUST Clara Stanschewski KAUST SdGerm_M_pct SdGerm PltNoHvRp_Ct_plant PltNoHvRp Clara Stanschewski KAUST SdWpPlot SdWpPlot_M_g Clara Stanschewski KAUST SdHlW_M_g KAUST SdHlW Clara Stanschewski SdSht_E_1to7 KAUST SdSht Clara Stanschewski Quinoa ontology acronym PltNoHv PltNoHv_Ct_plant Clara Stanschewski KAUST PtHt_M_cm Clara Stanschewski KAUST PtHt AGDBM Clara Stanschewski KAUST AGDBM_M_g SdPrm_Comp_mm Clara Stanschewski KAUST SdPrm Clara Stanschewski KAUST TGW TGW_M_g KAUST PlotCov_E_1to9 Clara Stanschewski PlotCov attribute HI Clara Stanschewski KAUST HI_C_pct Clara Stanschewski StmLy_E_1to9 KAUST StmLy KAUST BGDBM_M_g BGDBM Clara Stanschewski KAUST SdAvgBlue_Comp_rgb Clara Stanschewski SdAvgBlue Clara Stanschewski PcleCol KAUST PcleCol_E_4to16 PcleDen Clara Stanschewski KAUST PcleDen_E_1to7 PcleShp KAUST PcleShp_E_1to3 Clara Stanschewski Clara Stanschewski KAUST PcleLfs_E_1to7 PcleLfs Clara Stanschewski KAUST StmDiaPcle StmDiaPcle_M_mm Brnch Brnch_E_1to7 Clara Stanschewski KAUST Plant branchiness estimation None Number of representative plants harvested counting None None Seed yield per plant computation Tested in petri dishes (%) Germination rate Seed Seed germination rate SdGerm None Seed average blue color computation Scored from 1 = lax (loose) with panicle axes easily visible to 7 = tight and compact panicles Panicle Density PcleDen Panicle density Seed hectoliter weight measurement None Plot population homogeneity 1-3-5-7 Stem lying incidence Lying incidence StmLy Stem of the plant is not emerging straight up from the soil but has a kink at the base, growing along the ground before rising; assessing the percentage of the plot affected Stem SdAvgGreen Seed average green color Numerical seed color green value, RGB G Component from image analysis Seed average green color Plant growth habit 1-3-5-7 g Seed Seed shattering Shattering Grain persistence in the plant at physiological maturity. Assessing how easy seeds fall off the panicle upon light touch: 1 = No seeds falling to 7 = a lot of seeds falling SdSht Leaf margin estimation None SdAvgBlue average blue color Numerical seed color blue component, RGB B Component from image analysis Seed Seed average blue color rgb average perimeter Average perimeter of the seeds from image analysis Seed Seed average perimeter SdPrm Plot coverage Percentage of the plot covered, 1 = poor to 7 = good establishment Coverage PlotCov Plot PltNoHvRp Count the number of plants that were harvested seperately from the majority of the plot, as representative plants. Representative plants harvested Plot Number of representative plants harvested None Seed germination rate measurement Panicle density 1-3-5-7 Panicle shape estimation None SdWpPt Total harvested seed mass per plant may be calculated from number of plants harvested and the seed mass of all plants in the plot (SdWtpPlot/PltNoHv) Seed Yield per plant Seed yield per plant Growth stage Growth stage Plant Phenological growth stage; very important to record at mature phenotyping GrStg None Panicle axis angle estimation Presence (1) absence (0) scoring of pigmented axils AxlPig Axil pigmentation Pigmentation Axil Panicle shape 1-3-5 Shape Panicle shape Panicle Classified into one of the three categories: glomerulate, intermediate, or amarantiform PcleShp Yield/ above-ground biomass HI Harvest index Plant Havest index panicle Branchiness Plant Plant branchiness Brnch Score for the overall amount of side branches of representative plants in a plot, ignoring very small and spindly branches, ranging from 1 = no branches to 7 = bushy plant with many major lateral branches Angle Stem angle Stem The angle at which the majority of plants are leaning, measured between the vertical axis and the horizontal axis StmAng AGDBM Above-ground dry biomass Plant Plant above-ground dry biomass Cutting plants at the very base with secateurs and drying the entire above-ground section of the plant. Recording total dry weight and number of plants that make up total dry weight. Divide total weight with number of plants to give weight per plant Seed average green color computation None Seed average perimeter computation None Seed hectoliter weight Hectoliter weight Seed Hectoliter weight, or specific weight of seeds: Estimation of density, determined by weighing all seeds fitting into a 100 ml volume SdHlW Stem color estimation None Stem angle 1-3-5-7 Seed yield per plot measurement None Stem lying incidence estimation None None Seed shattering estimation Stem lying incidence 1-3-5-7-9 Stem leaf shape 1-2 Plants are prostrate, on or near the ground, with intact stems; assessing the percentage of the plot affected Lodging incidence Stem lodging incidence Stem StmLodg None Stem lodging incidence estimation BBCH None Thousand Grain Weight measurement Stem Leaves of the stem are categorized into two groups: rhomboidal (1) and triangular (2) StmLfShp Stem leaf shape Leaf shape Four categories of growth habit described in images on the scoring card. Here the focus lies on whether branching is present from the base of the plant and if a main inflorescence can be identified Plant growth habit GH Plant Growth habit Plot coverage 1-3-5-7-9 None Panicle density estimation Seed average red color computation None Seed mass of approximately four representative plants that were harvested from the center of the plot (seed should be dried to constant weight) Yield of representative plants Seed SdWRepPt Seed yield for representative plants None Stem diameter near plant base measurement PcleLfs Leafiness Scored from 1 = no leaves to 7 = many leaves Panicle leafiness Panicle Count of the number of significant panicles, i.e., larger panicles, near the top of the plant, harvestable, that provide a major contribution to the seed harvested from the plant Number of significant panicles Number of significant SigPcle Panicle mm Stem Stem color StmCol Color Categorized into green (13), red (4), or no pigmentation (15) BGDBM Below-ground dry biomass Plant below-ground dry biomass Plant If possible, root biomass could also be measured (especially when plants are growing in sandy soil) None Panicle leafiness estimation Total number of plants that were harvested of the plot. Plot Plants harvested PltNoHv Number of plants harvested per plot Stem angle estimation None average area Seed SdA Average area of the seeds from image analysis Seed average area None Plant growth habit estimation None Stem diameter under the panicle measurement None Stem striae estimation Plant above-ground dry biomass measurement None None Number of significant panicles counting Plant below-ground dry biomass measurement None Panicle length measurement None Axil pigmentation estimation None scale_of average red color Seed average red color Numerical seed color red value, RGB R Component from image analysis SdAvgRed Seed Stem color 13-4-15 Leaf margin 1-3-5 None Harvest index computation Stem lodging incidence 1-3-5-7-9 Panicle axis angle 1-3-5-7 Categorized according to the color scoring card Panicle color Color Panicle PcleCol Plant height measurement None method_of Axil pigmentation 0-1 cm Plot Plot population homogeneity Population homogeneity Judgment of homogeneity of the accession, 1 = homogeneous to 7 = mixed PlotHomo None Number of plants harvested per plot counting None Growth stage estimation TGW Seed Thousand grain weight Thousand Grain Weight (TGW), the weight of 1000 seeds Thousand Grain Weight plant Panicle color 13-16-4-7-15 None Plot population homogeneity estimation None Plot coverage estimation PcleLng Panicle Length of the primary panicle measured with the same stick. Measured from the base of the panicle to the tip Panicle length Length Presence (1) absence (0) scoring of stem streaks or stripes StmStr Striae Stem Stem striae Leaf margins are classified into 3 groups LfMgn Margin Leaf Leaf margin Seed average area computation None Thickness of the stem measured just underneath the main panicle Stem Stem diameter under the panicle Diameter under the panicle StmDiaPcle Thickness of the stem measured with calipers at the middle of the bottom third of the plant stem Stem Stem diameter near plant base Diameter at the plant base StmDiaBse None Panicle color estimation variable_of Seed shattering 1-3-5-7 Seed yield for representative plants measurement None Stem breakage incidence estimation None Stem breakage incidence 1-3-5-7-9 Stem leaf shape estimation None Stems are broken or detached, assessing the percentage of the plot affected Breakage incidence Stem StmBrk Stem breakage incidence Stem striae 0-1 Panicle leafiness 1-3-5-7 Seed Seed yield per plot Harvesting the panicles remaining per plot while excluding borders, and adding the weight to that from the four representative plants, seed dried in oven to constant weight Yield total SdWpPlot Height Height of the most representative plants of the plot, usually from the middle of the plot, measured with a long measuring stick from soil to the tip of the panicle. If more than one distinct phenotype is present, more than one plant may be recorded in a new row of the spreadsheet, with all phenotypes that are differing recorded separately PtHt Plant height Plant Axis angle Panicle PcleAng The angle at which the majority of panicle axes are leaning, measured between an upright panicle on the verticle and a panicle pointing towards the ground Panicle axis angle % Plant branchiness 1-3-5-7