Clara Stanschewski PcleShp PcleShp_E_1to3 KAUST SdAvgRed_Comp_rgb SdAvgRed KAUST Clara Stanschewski BGDBM Clara Stanschewski BGDBM_M_g KAUST KAUST StmLodg Clara Stanschewski StmLodg_E_1to9 PlotHomo_E_1to7 PlotHomo KAUST Clara Stanschewski GrStg GrStg_E_BBCH KAUST Clara Stanschewski Clara Stanschewski PcleCol KAUST PcleCol_E_4to16 PltNoHvRp KAUST PltNoHvRp_Ct_plant Clara Stanschewski AGDBM_M_g Clara Stanschewski AGDBM KAUST StmDiaBse_M_mm KAUST StmDiaBse Clara Stanschewski Clara Stanschewski PtHt_M_cm PtHt KAUST KAUST Clara Stanschewski SdHlW SdHlW_M_g Clara Stanschewski StmAng_E_1to7 StmAng KAUST Clara Stanschewski Brnch_E_1to7 Brnch KAUST KAUST PltNoHv_Ct_plant PltNoHv Clara Stanschewski KAUST Clara Stanschewski AxlPig AxlPig_E_0to1 KAUST StmBrk StmBrk_E_1to9 Clara Stanschewski Clara Stanschewski HI_C_pct KAUST HI PcleLng Clara Stanschewski PcleLng_M_cm KAUST SdAvgGreen Clara Stanschewski SdAvgGreen_Comp_rgb KAUST KAUST PlotCov PlotCov_E_1to9 Clara Stanschewski Clara Stanschewski PcleAng_E_1to7 KAUST PcleAng KAUST SdGerm Clara Stanschewski SdGerm_M_pct Clara Stanschewski SdPrm_Comp_mm KAUST SdPrm KAUST StmStr_E_0to1 StmStr Clara Stanschewski KAUST StmLfShp Clara Stanschewski StmLfShp_E_1to2 KAUST Clara Stanschewski StmCol_E_4to15 StmCol SigPcle Clara Stanschewski SigPcle_Ct_panicle KAUST KAUST Clara Stanschewski GH_E_1to7 GH Clara Stanschewski KAUST PcleDen PcleDen_E_1to7 StmDiaPcle KAUST Clara Stanschewski StmDiaPcle_M_mm SdAvgBlue_Comp_rgb KAUST SdAvgBlue Clara Stanschewski attribute SdWpPt_C_g KAUST SdWpPt Clara Stanschewski Clara Stanschewski SdWRepPt_M_g SdWRepPt KAUST TGW_M_g Clara Stanschewski TGW KAUST PcleLfs PcleLfs_E_1to7 KAUST Clara Stanschewski SdSht_E_1to7 KAUST SdSht Clara Stanschewski acronym KAUST StmLy_E_1to9 StmLy Clara Stanschewski KAUST Clara Stanschewski SdA_Comp_mm SdA KAUST Clara Stanschewski SdWpPlot SdWpPlot_M_g LfMgn LfMgn_E_1to5 Clara Stanschewski KAUST Quinoa ontology entity Categorized according to the color scoring card Color Panicle color Panicle PcleCol None Seed average red color computation PltNoHvRp Plot Representative plants harvested Count the number of plants that were harvested seperately from the majority of the plot, as representative plants. Number of representative plants harvested SdWpPlot Harvesting the panicles remaining per plot while excluding borders, and adding the weight to that from the four representative plants, seed dried in oven to constant weight Seed Yield total Seed yield per plot Seed mass of approximately four representative plants that were harvested from the center of the plot (seed should be dried to constant weight) Yield of representative plants Seed yield for representative plants SdWRepPt Seed PlotHomo Judgment of homogeneity of the accession, 1 = homogeneous to 7 = mixed Plot population homogeneity Plot Population homogeneity Panicle The angle at which the majority of panicle axes are leaning, measured between an upright panicle on the verticle and a panicle pointing towards the ground Panicle axis angle Axis angle PcleAng Plant growth habit estimation None Classified into one of the three categories: glomerulate, intermediate, or amarantiform Panicle Panicle shape Shape PcleShp SdAvgGreen Numerical seed color green value, RGB G Component from image analysis Seed Seed average green color average green color Yield/ above-ground biomass Plant HI Havest index Harvest index Presence (1) absence (0) scoring of stem streaks or stripes Striae Stem StmStr Stem striae Harvest index computation None Stem leaf shape estimation None Plant growth habit 1-3-5-7 Stem Plants are prostrate, on or near the ground, with intact stems; assessing the percentage of the plot affected Lodging incidence StmLodg Stem lodging incidence g Seed SdPrm average perimeter Average perimeter of the seeds from image analysis Seed average perimeter Axil pigmentation estimation None Number of significant panicles counting None GrStg Growth stage Growth stage Plant Phenological growth stage; very important to record at mature phenotyping Plant growth habit GH Four categories of growth habit described in images on the scoring card. Here the focus lies on whether branching is present from the base of the plant and if a main inflorescence can be identified Growth habit Plant Stem Lying incidence Stem of the plant is not emerging straight up from the soil but has a kink at the base, growing along the ground before rising; assessing the percentage of the plot affected StmLy Stem lying incidence TGW Thousand Grain Weight (TGW), the weight of 1000 seeds Thousand Grain Weight Thousand grain weight Seed variable_of Axil Presence (1) absence (0) scoring of pigmented axils AxlPig Axil pigmentation Pigmentation Leaf margins are classified into 3 groups Leaf Leaf margin Margin LfMgn Seed average green color computation None Numerical seed color blue component, RGB B Component from image analysis average blue color Seed average blue color SdAvgBlue Seed None Panicle color estimation Diameter at the plant base Stem diameter near plant base StmDiaBse Thickness of the stem measured with calipers at the middle of the bottom third of the plant stem Stem Plant branchiness 1-3-5-7 Stem Stem breakage incidence Breakage incidence Stems are broken or detached, assessing the percentage of the plot affected StmBrk Seed yield per plot measurement None Stem lying incidence 1-3-5-7-9 None Growth stage estimation Stem breakage incidence 1-3-5-7-9 Grain persistence in the plant at physiological maturity. Assessing how easy seeds fall off the panicle upon light touch: 1 = No seeds falling to 7 = a lot of seeds falling Shattering Seed shattering SdSht Seed rgb Above-ground dry biomass Plant above-ground dry biomass Cutting plants at the very base with secateurs and drying the entire above-ground section of the plant. Recording total dry weight and number of plants that make up total dry weight. Divide total weight with number of plants to give weight per plant Plant AGDBM Panicle Length Panicle length Length of the primary panicle measured with the same stick. Measured from the base of the panicle to the tip PcleLng Stem angle 1-3-5-7 If possible, root biomass could also be measured (especially when plants are growing in sandy soil) Below-ground dry biomass Plant below-ground dry biomass BGDBM Plant Leaves of the stem are categorized into two groups: rhomboidal (1) and triangular (2) Stem leaf shape StmLfShp Stem Leaf shape Seed Seed average red color average red color Numerical seed color red value, RGB R Component from image analysis SdAvgRed Stem striae estimation None Plot population homogeneity 1-3-5-7 None Stem breakage incidence estimation Panicle leafiness estimation None cm Plant above-ground dry biomass measurement None Leaf margin estimation None None Number of plants harvested per plot counting Color Stem Stem color StmCol Categorized into green (13), red (4), or no pigmentation (15) Seed average area computation None Score for the overall amount of side branches of representative plants in a plot, ignoring very small and spindly branches, ranging from 1 = no branches to 7 = bushy plant with many major lateral branches Branchiness Plant branchiness Brnch Plant Seed yield for representative plants measurement None Seed average perimeter computation None Coverage Plot coverage Plot Percentage of the plot covered, 1 = poor to 7 = good establishment PlotCov Plants harvested PltNoHv Total number of plants that were harvested of the plot. Number of plants harvested per plot Plot None Stem angle estimation plant Stem diameter near plant base measurement None Stem lying incidence estimation None Seed average blue color computation None Seed hectoliter weight Hectoliter weight Seed Hectoliter weight, or specific weight of seeds: Estimation of density, determined by weighing all seeds fitting into a 100 ml volume SdHlW % Stem color 13-4-15 Seed shattering 1-3-5-7 Average area of the seeds from image analysis average area Seed Seed average area SdA None Seed germination rate measurement Seed hectoliter weight measurement None Stem lodging incidence 1-3-5-7-9 panicle Panicle leafiness Scored from 1 = no leaves to 7 = many leaves Leafiness PcleLfs Panicle Panicle shape estimation None None Seed shattering estimation Plot population homogeneity estimation None Panicle shape 1-3-5 Plot coverage 1-3-5-7-9 Plant below-ground dry biomass measurement None Panicle axis angle 1-3-5-7 method_of Panicle axis angle estimation None Panicle color 13-16-4-7-15 None Plant branchiness estimation Stem striae 0-1 Stem color estimation None Panicle density PcleDen Panicle Scored from 1 = lax (loose) with panicle axes easily visible to 7 = tight and compact panicles Density None Seed yield per plant computation None Panicle length measurement None Number of representative plants harvested counting mm Panicle leafiness 1-3-5-7 Plant height Plant PtHt Height of the most representative plants of the plot, usually from the middle of the plot, measured with a long measuring stick from soil to the tip of the panicle. If more than one distinct phenotype is present, more than one plant may be recorded in a new row of the spreadsheet, with all phenotypes that are differing recorded separately Height Stem lodging incidence estimation None Thousand Grain Weight measurement None Yield per plant Seed SdWpPt Seed yield per plant Total harvested seed mass per plant may be calculated from number of plants harvested and the seed mass of all plants in the plot (SdWtpPlot/PltNoHv) Plant height measurement None The angle at which the majority of plants are leaning, measured between the vertical axis and the horizontal axis Stem Stem angle Angle StmAng Panicle density 1-3-5-7 Stem diameter under the panicle measurement None Number of significant Count of the number of significant panicles, i.e., larger panicles, near the top of the plant, harvestable, that provide a major contribution to the seed harvested from the plant SigPcle Panicle Number of significant panicles Stem leaf shape 1-2 Stem StmDiaPcle Thickness of the stem measured just underneath the main panicle Diameter under the panicle Stem diameter under the panicle None Plot coverage estimation Panicle density estimation None SdGerm Tested in petri dishes (%) Germination rate Seed germination rate Seed Leaf margin 1-3-5 BBCH scale_of Axil pigmentation 0-1