KAUST Clara Stanschewski SdGerm_M_pct SdGerm KAUST PcleShp_E_1to3 Clara Stanschewski PcleShp StmCol_E_4to15 StmCol KAUST Clara Stanschewski PlotCov PlotCov_E_1to9 KAUST Clara Stanschewski KAUST PltNoHv PltNoHv_Ct_plant Clara Stanschewski KAUST Clara Stanschewski SdWRepPt SdWRepPt_M_g KAUST PcleCol_E_4to16 Clara Stanschewski PcleCol KAUST PcleAng_E_1to7 PcleAng Clara Stanschewski KAUST SigPcle_Ct_panicle Clara Stanschewski SigPcle SdAvgBlue_Comp_rgb KAUST Clara Stanschewski SdAvgBlue StmLodg Clara Stanschewski StmLodg_E_1to9 KAUST StmAng KAUST Clara Stanschewski StmAng_E_1to7 SdSht KAUST SdSht_E_1to7 Clara Stanschewski PcleLng PcleLng_M_cm KAUST Clara Stanschewski Clara Stanschewski PcleLfs_E_1to7 PcleLfs KAUST KAUST GrStg_E_BBCH Clara Stanschewski GrStg KAUST AxlPig_E_0to1 AxlPig Clara Stanschewski KAUST GH Clara Stanschewski GH_E_1to7 BGDBM KAUST BGDBM_M_g Clara Stanschewski StmStr_E_0to1 StmStr Clara Stanschewski KAUST Quinoa ontology Clara Stanschewski SdHlW_M_g SdHlW KAUST HI_C_pct HI KAUST Clara Stanschewski SdAvgRed Clara Stanschewski SdAvgRed_Comp_rgb KAUST attribute PtHt KAUST Clara Stanschewski PtHt_M_cm StmLy_E_1to9 KAUST Clara Stanschewski StmLy Clara Stanschewski SdWpPlot_M_g SdWpPlot KAUST PlotHomo_E_1to7 KAUST Clara Stanschewski PlotHomo SdPrm KAUST SdPrm_Comp_mm Clara Stanschewski LfMgn KAUST LfMgn_E_1to5 Clara Stanschewski StmBrk Clara Stanschewski StmBrk_E_1to9 KAUST acronym TGW KAUST TGW_M_g Clara Stanschewski Clara Stanschewski StmDiaBse StmDiaBse_M_mm KAUST Clara Stanschewski PltNoHvRp_Ct_plant PltNoHvRp KAUST StmDiaPcle Clara Stanschewski StmDiaPcle_M_mm KAUST SdWpPt KAUST Clara Stanschewski SdWpPt_C_g KAUST AGDBM Clara Stanschewski AGDBM_M_g Clara Stanschewski StmLfShp StmLfShp_E_1to2 KAUST KAUST SdAvgGreen Clara Stanschewski SdAvgGreen_Comp_rgb SdA_Comp_mm Clara Stanschewski SdA KAUST PcleDen_E_1to7 PcleDen Clara Stanschewski KAUST Brnch KAUST Brnch_E_1to7 Clara Stanschewski entity GH Growth habit Plant Four categories of growth habit described in images on the scoring card. Here the focus lies on whether branching is present from the base of the plant and if a main inflorescence can be identified Plant growth habit Panicle density 1-3-5-7 Stem diameter under the panicle measurement None Axil pigmentation 0-1 Panicle length Panicle Length Length of the primary panicle measured with the same stick. Measured from the base of the panicle to the tip PcleLng Stem lodging incidence 1-3-5-7-9 StmAng Angle The angle at which the majority of plants are leaning, measured between the vertical axis and the horizontal axis Stem Stem angle Stem Stem color StmCol Color Categorized into green (13), red (4), or no pigmentation (15) Color Categorized according to the color scoring card Panicle color PcleCol Panicle SdGerm Tested in petri dishes (%) Seed germination rate Seed Germination rate Leaf margin 1-3-5 scale_of PltNoHvRp Plot Count the number of plants that were harvested seperately from the majority of the plot, as representative plants. Representative plants harvested Number of representative plants harvested SdWRepPt Yield of representative plants Seed Seed yield for representative plants Seed mass of approximately four representative plants that were harvested from the center of the plot (seed should be dried to constant weight) None Number of plants harvested per plot counting None Stem angle estimation None Plant branchiness estimation Harvest index computation None None Seed yield per plot measurement Seed average perimeter computation None Stem Lying incidence Stem of the plant is not emerging straight up from the soil but has a kink at the base, growing along the ground before rising; assessing the percentage of the plot affected Stem lying incidence StmLy Panicle axis angle 1-3-5-7 Panicle leafiness 1-3-5-7 Seed average red color computation None Panicle axis angle Panicle Axis angle PcleAng The angle at which the majority of panicle axes are leaning, measured between an upright panicle on the verticle and a panicle pointing towards the ground Panicle leafiness estimation None Plants are prostrate, on or near the ground, with intact stems; assessing the percentage of the plot affected Stem StmLodg Stem lodging incidence Lodging incidence None Growth stage estimation Seed average blue color Numerical seed color blue component, RGB B Component from image analysis average blue color Seed SdAvgBlue Plot coverage 1-3-5-7-9 Brnch Plant Score for the overall amount of side branches of representative plants in a plot, ignoring very small and spindly branches, ranging from 1 = no branches to 7 = bushy plant with many major lateral branches Plant branchiness Branchiness Below-ground dry biomass Plant BGDBM If possible, root biomass could also be measured (especially when plants are growing in sandy soil) Plant below-ground dry biomass g Phenological growth stage; very important to record at mature phenotyping Growth stage Growth stage GrStg Plant Harvesting the panicles remaining per plot while excluding borders, and adding the weight to that from the four representative plants, seed dried in oven to constant weight Seed Yield total Seed yield per plot SdWpPlot Seed Grain persistence in the plant at physiological maturity. Assessing how easy seeds fall off the panicle upon light touch: 1 = No seeds falling to 7 = a lot of seeds falling Shattering SdSht Seed shattering Height Plant Plant height PtHt Height of the most representative plants of the plot, usually from the middle of the plot, measured with a long measuring stick from soil to the tip of the panicle. If more than one distinct phenotype is present, more than one plant may be recorded in a new row of the spreadsheet, with all phenotypes that are differing recorded separately Stem lying incidence 1-3-5-7-9 Seed average red color SdAvgRed Numerical seed color red value, RGB R Component from image analysis average red color Seed Stem lying incidence estimation None None Plant above-ground dry biomass measurement Seed germination rate measurement None Stem color 13-4-15 Panicle color 13-16-4-7-15 Stem breakage incidence 1-3-5-7-9 SdA Average area of the seeds from image analysis average area Seed Seed average area None Number of representative plants harvested counting mm Plant growth habit estimation None Leaf Leaf margins are classified into 3 groups Margin LfMgn Leaf margin Stem breakage incidence estimation None Panicle axis angle estimation None Hectoliter weight Seed Seed hectoliter weight Hectoliter weight, or specific weight of seeds: Estimation of density, determined by weighing all seeds fitting into a 100 ml volume SdHlW Plant above-ground dry biomass AGDBM Plant Above-ground dry biomass Cutting plants at the very base with secateurs and drying the entire above-ground section of the plant. Recording total dry weight and number of plants that make up total dry weight. Divide total weight with number of plants to give weight per plant Panicle color estimation None Panicle density estimation None Yield per plant SdWpPt Total harvested seed mass per plant may be calculated from number of plants harvested and the seed mass of all plants in the plot (SdWtpPlot/PltNoHv) Seed Seed yield per plant Number of significant panicles counting None None Stem lodging incidence estimation Seed shattering 1-3-5-7 Pigmentation Axil pigmentation AxlPig Presence (1) absence (0) scoring of pigmented axils Axil None Seed yield for representative plants measurement Stem leaf shape estimation None Stem striae estimation None Panicle length measurement None Stem angle 1-3-5-7 Stem diameter near plant base measurement None None Plant height measurement panicle Seed average blue color computation None Panicle PcleLfs Scored from 1 = no leaves to 7 = many leaves Leafiness Panicle leafiness Thousand Grain Weight (TGW), the weight of 1000 seeds Thousand Grain Weight Seed Thousand grain weight TGW Stem breakage incidence Stems are broken or detached, assessing the percentage of the plot affected Breakage incidence Stem StmBrk Panicle shape Panicle PcleShp Shape Classified into one of the three categories: glomerulate, intermediate, or amarantiform cm Seed average green color computation None Stem Stem leaf shape StmLfShp Leaf shape Leaves of the stem are categorized into two groups: rhomboidal (1) and triangular (2) Count of the number of significant panicles, i.e., larger panicles, near the top of the plant, harvestable, that provide a major contribution to the seed harvested from the plant Panicle SigPcle Number of significant panicles Number of significant Axil pigmentation estimation None None Stem color estimation Plants harvested PltNoHv Plot Number of plants harvested per plot Total number of plants that were harvested of the plot. Plant below-ground dry biomass measurement None average green color SdAvgGreen Numerical seed color green value, RGB G Component from image analysis Seed Seed average green color Stem Diameter at the plant base Stem diameter near plant base Thickness of the stem measured with calipers at the middle of the bottom third of the plant stem StmDiaBse Thickness of the stem measured just underneath the main panicle Stem diameter under the panicle Stem StmDiaPcle Diameter under the panicle Average perimeter of the seeds from image analysis Seed average perimeter average perimeter SdPrm Seed Stem leaf shape 1-2 Plot coverage estimation None Plot population homogeneity estimation None Panicle shape 1-3-5 None Leaf margin estimation % None Seed average area computation None Seed shattering estimation Panicle PcleDen Scored from 1 = lax (loose) with panicle axes easily visible to 7 = tight and compact panicles Panicle density Density Striae Stem striae Stem StmStr Presence (1) absence (0) scoring of stem streaks or stripes Stem striae 0-1 Coverage Plot PlotCov Percentage of the plot covered, 1 = poor to 7 = good establishment Plot coverage rgb Seed hectoliter weight measurement None Plot PlotHomo Plot population homogeneity Population homogeneity Judgment of homogeneity of the accession, 1 = homogeneous to 7 = mixed Thousand Grain Weight measurement None Plant Yield/ above-ground biomass Harvest index HI Havest index BBCH plant Plant branchiness 1-3-5-7 method_of None Panicle shape estimation Plant growth habit 1-3-5-7 variable_of Seed yield per plant computation None Plot population homogeneity 1-3-5-7