Fruits/Cones number NBF[Adonis] NbCones INRA Nb_cone NBF Nb_cones Célia Michotey NBCON Célia Michotey INRA Forking year ANFO ANFO[Adonis] Inês Chaves IBET Pores Area Pores Area PoA[Adonis] 6 Embossed leaves Abundant: abundant groups or few groups but with many individuals regularly spread all over the plot 4 ram Ramicorn INRA First fruits reached maximum size Célia Michotey BBCH_70 70_NB[Adonis] TB Célia Michotey TB[Adonis] INRA Number of buds at the terminal cluster Medium 3 0 Worst color Cork AG Cork annual growth Inês Chaves AnnualGrowth IBET CAG[Adonis] FOSn5[Adonis] Forking score - rating on 5 Célia Michotey INRA FO_score_n5 Polycyclism on the terminal and lateral shoots and these lateral shoots remain dominated 2 Célia Michotey 30_NB[Adonis] INRA BBCH_30 Start of shoot growth HPOU INRA deltaH IH IHeight Height increment Célia Michotey HI deltaH.F IH[Adonis] IBET PL-R[Adonis] Pore_L-R Pore Length - Radial section PoresLength_R Inês Chaves Unscathed tree, without damage 0 5 Média INRA Carotenoid content per leaf area CARa[Adonis] CARa Célia Michotey Height first living branch HBV HBV[Adonis] Célia Michotey INRA Célia Michotey DHL[Adonis] DHL Date maximum color level of visible hypertrophied lenticels INRA INRA/IBET LNCm Célia Michotey/Inês Chaves LNCm[Adonis] Leaf nitrogen content per leaf dry mass INRA BBCH_76 76_NB[Adonis] 60% of fruits reached maximum size Célia Michotey 3 Very strong meander PhiPS2 Inês Chaves Leaf quantum yield of photosystem II IBET He He[Adonis] Expected heterozygosity Célia Michotey INRA Allelic richness AR[Adonis] Célia Michotey AR INRA INRA Germacrene content Célia Michotey germacrene 03 Most leaf or mixed buds have finished swelling and are ready to burst. For some species the scales may have changed color. Full cover > 95% 1 to 2 very strong curves 2 5 1 to 2 cm of diameter at the insertion point 50_NB[Adonis] Célia Michotey BBCH_50 INRA Dormant winter flower bud Almost spread leaves, start of shoot 7 4 Branch (ramicorn; thinner than a fork) with a similar angle INRA COM[Adonis] DESC Célia Michotey Comments Observations COM Intermediate 2 INRA BBCH_39 Shoots at 90% of their size Célia Michotey 39_NB[Adonis] cov2[Adonis] cover2 Célia Michotey Relative Vegetation/Rock cover INRA 90% of flowers sexually mature BBCH_69 Célia Michotey 69_NB[Adonis] INRA Flower buds swelling Célia Michotey INRA BBCH_51 51_NB[Adonis] INRA BBCH_53 53_NB[Adonis] Célia Michotey Flower buds opening Ramicorn Célia Michotey INRA RA[Adonis] RA 2 Dead F2 fully stretched no bud structure 2 Total protein content per leaf dry mass INRA TPCm[Adonis] TPCm Célia Michotey Basal sweep CB[Adonis] Célia Michotey bs Co INRA CB Célia Michotey INRA 70% of leaves faded or fallen BBCH_97 97_NB[Adonis] BRAn3[Adonis] Célia Michotey Branching - rating on 3 BRA_n3 INRA BBCH_49 50% of buds lignified and mature INRA Célia Michotey 49_NB[Adonis] BBCH_94 40% of leaves faded or fallen 94_NB[Adonis] Célia Michotey INRA Célia Michotey 98_NB[Adonis] 80% of leaves faded or fallen BBCH_98 INRA Célia Michotey Fructification INRA CON FRUC FRUC[Adonis] TSuberin_CC Inês Chaves IBET Total suberin content Tree diameter DBH[Adonis] D DIA DBH Célia Michotey INRA/IBET Inês Chaves Chlorophyll a IBET Chl a The first fruits of the crown are mature (has changed color or is dried and dehiscent or has fallen) 80 FSE FS SEC[Adonis] SEC Célia Michotey Drought damage INRA/IBET 90% of leaves faded or fallen Célia Michotey BBCH_99 INRA 99_NB[Adonis] 11_NB[Adonis] Célia Michotey BBCH_11 INRA 10% of leaves/needles out 4 Dry tree %N Leaf nitrogen content %N %N[Adonis] Célia Michotey INRA 0 No marcescent INRA Elevation elev[Adonis] elevation Célia Michotey SAR[Adonis] Célia Michotey INRA SAR Specific activity of Rubisco in leaves Célia Michotey DT[Adonis] INRA Trunk diameter below largest branch DT 60 The first flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. gwmean gwmean[Adonis] Célia Michotey Mean stomatal conductance INRA Game damage note INRA GIBN GIBN[Adonis] Célia Michotey 2 INRA NBBRM[Adonis] Nomber of master branches Célia Michotey NBBRM Célia Michotey INRA BBCH_33 33_NB[Adonis] Shoots at 30% of their size 40% of the fruits reached their usual maximum size, but did not changed color yet 74 INRA 50% of flowers sexually mature 65_NB[Adonis] Célia Michotey BBCH_65 Célia Michotey Uredinia Number UN[Adonis] INRA UN INRA Straightened branch BRR BRR[Adonis] Célia Michotey BS_score BS_s[Adonis] Budset Célia Michotey Budset scoring INRA IBET Lenticels : number of cells lygnifying N-LL[Adonis] Inês Chaves N-Lygn_lent Célia Michotey mBF[Adonis] INRA mBF Mean late wood density 4 Wood inclusions area - Tangential section area IBET nail Area_Ta Nail size area - Tangential section Prego-Ta NS-Ta[Adonis] Inês Chaves 8 ? INRA BBCH_10 10_NB[Adonis] First leaves/needles out Célia Michotey Inês Chaves N-A&E_lent IBET Lenticels : number of cells alongating/expanding N-AEL[Adonis] INRA Branching habit Célia Michotey BRAH[Adonis] BRAH PoR[Adonis] Pores Roundness Inês Chaves Pores Roundness IBET Individual slope INRA slope[Adonis] slope Célia Michotey 10 Worst More than 75% of the area covered 8 Wood axial parenchyma high WAP-h Inês Chaves IBET WAP-h[Adonis] CHAH[Adonis] Chalara on the tree upper part CHALHa Célia Michotey INRA CHALH Photosynthetic rate Inês Chaves IBET An Epicormic branch volume vEpiBC vEBC[Adonis] Célia Michotey INRA Cork Quality IBET QUAL[Adonis] QUAL Inês Chaves 7 ? Célia Michotey CLOI Thinning INRA ECL ECL[Adonis] Pore_Round-Tr PoresRoundness_Tr Pore Roundness - Transverse section Inês Chaves PR-Tr[Adonis] IBET INRA Feet number NBPIED Célia Michotey NBP[Adonis] Pollarding Célia Michotey DCE[Adonis] INRA DCE 99 0% of the foliage turned color (color range depending) or fell INRA Saccharose content per leaf dry mass SCm[Adonis] Célia Michotey SCm Leaf chlorophyll content per leaf area LCCa Célia Michotey INRA LCCa[Adonis] 90 The first leaves of the crown have faded or fallen nSBD[Adonis] nSecBD Number of secondary buds Célia Michotey INRA Few and/or thin branches 1 Crown with brownish foliage and needle fall 1 2 4 to 5 cm of diameter at the insertion point 86_NB[Adonis] Célia Michotey INRA BBCH_86 60% of fruits mature INRA/IBET Célia Michotey Frost damage GEL[Adonis] GEL WHC[Adonis] Célia Michotey/Inês Chaves WHC INRA/IBET Hemicellulose wood composition nSeqBC nSBC[Adonis] INRA Number of sequential branches Célia Michotey SuberinTyramine_CC Suberin Tyramine content Inês Chaves IBET Stem water content SWC Inês Chaves IBET Inês Chaves % Prego-R PN-R[Adonis] IBET NailInclusionsCoef_R Wood inclusions percentage - Radial section area Nail size percentage - Radial section %nail Area_Tr NBF_mean Célia Michotey INRA Fruits/Cones number mean NBF_m[Adonis] % Pore size - Tangential section PorosityCoef_Ta IBET PP-Ta[Adonis] % Pore-Ta Inês Chaves Inês Chaves IBET ETR Leaf electron transport rate Célia Michotey SI SI[Adonis] INRA Stomatal index Célia Michotey Ci130 INRA Tree girth CIR CIR[Adonis] Tree circumference C130 DOC Célia Michotey INRA DOC[Adonis] Dissolved oxygen content IBET Formiga Inês Chaves Formi[Adonis] Formiga Status INRA STAT[Adonis] STAT Célia Michotey Mean lowest density values min5 Célia Michotey INRA min5[Adonis] Célia Michotey Number of resprouts INRA Shoots.F Shoot[Adonis] Shoots Shoots.I Shoots.UK NBBRA Célia Michotey NBBR[Adonis] INRA NBBR Branches number INRA Blossoming FLO FLO[Adonis] Célia Michotey ESD[Adonis] Detailed health status Célia Michotey INRA ESDET Célia Michotey SEX[Adonis] SEX INRA Sex determination mBI[Adonis] Célia Michotey Mean early wood density INRA mBI Leaves are fully expanded (early flushing) 3 Célia Michotey BBCH_89 INRA 90% of fruits mature 89_NB[Adonis] Célia Michotey ST[Adonis] INRA ST Leaf Staining IBET Pore Length - Transversal section PL-Tr[Adonis] PoresLength_Tr Pore_L-Tr Inês Chaves IBET Inês Chaves Cobri[Adonis] Cobrilha Cobrilha Célia Michotey Enzymatic activity of Glutamine GS[Adonis] INRA GS Chlorophyll b IBET Chl b Inês Chaves Célia Michotey INRA BBCH_35 Shoots at 50% of their size 35_NB[Adonis] BBCH_55 55_NB[Adonis] Célia Michotey Floral buds emerged but closed INRA Inês Chaves IBET Suberin Hydroxyoctadecanoid content SuberinOHoctadecanoidA_CC Net photosynthesis net_An Inês Chaves IBET 84 40% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) vSBC[Adonis] vSeqBC INRA Sequential branches volume Célia Michotey color da barriga IBET BC cor da barriga BC[Adonis] Inner plank surface color Inês Chaves NBREC Harvest number Célia Michotey NBREC[Adonis] CONREC INRA INRA 90_NB[Adonis] Célia Michotey BBCH_90 First leaves faded or fallen Terrentas/Barrentas Inês Chaves Terrentas/Barrentas IBET More than 10 non-agglomerated sores 3 Inês Chaves IBET Leaf_CO2_curve Leaf CO2 light response curve Célia Michotey INRA Rubisco content per gram of proteins RQp RQp[Adonis] Distance individual/neighbor Célia Michotey DIST[Adonis] INRA DIST Dead -5 NID[Adonis] NID Nests presence Célia Michotey INRA/IBET Healthy, no sore 1 50% of leaves/needles out Célia Michotey INRA 15_NB[Adonis] BBCH_15 Canker_nb NBCHA Célia Michotey NBCH Canker number CNB[Adonis] INRA 70% of leaves/needles out 17_NB[Adonis] Célia Michotey INRA BBCH_17 INRA Sequential branches angle aSeqBC aSBC[Adonis] Célia Michotey ECH[Adonis] ECH Célia Michotey Sampling INRA Célia Michotey EPI EPI[Adonis] INRA Epinasty 0 Tree completely dry, only the main axis remains Shoots at 70% of their size 37_NB[Adonis] BBCH_37 Célia Michotey INRA BBCH_31 Célia Michotey Shoots at 10% of their size 31_NB[Adonis] INRA Absence 0 Presence of a few sores (10 max) difficult to detect 2 photo Célia Michotey photo[Adonis] INRA Photo 4 Very vigorous BBCH_91 INRA 10% of leaves faded or fallen Célia Michotey 91_NB[Adonis] SuberinAlkanols_CC Suberin Alkanols content Inês Chaves IBET Angle[Adonis] INRA Célia Michotey ANG_n3b Branch angle - rating on 3 Up to 99% of affected shoots, tree almost dead 4 INRA BarkT Bark thickness Célia Michotey BarkT[Adonis] INRA D_S Drought damage defects DEF_SEC DEF_S[Adonis] Célia Michotey No symptom 0 INRA NM.F NM[Adonis] Leaf nitrogen content LNC Célia Michotey NM TPgCm[Adonis] Total pigments content per leaf dry mass Célia Michotey TpgCm INRA TRW[Adonis] ARW Annual ring width Tree ring width Growth ring width Célia Michotey/Inês Chaves RW TRW INRA/IBET I Wood inclusions Nail size IBET Prego NS[Adonis] Inês Chaves nLBD[Adonis] INRA Number of latent buds nLBD Célia Michotey 1,5 F2 fully stretched transition to bud structure FOR[Adonis] Shape FOR Célia Michotey INRA 1 Early % nail Area_Tr PN-Tr[Adonis] Inês Chaves IBET % Prego-Tr Nail size percentage - Transversal section Wood inclusions percentage - Transversal section NailInclusionsCoef_Tr 2 25 to 50% of the foliage remaining BF_BBCH Budflush BBCH BF_NB[Adonis] Célia Michotey INRA Percentage venation PV[Adonis] Célia Michotey PV INRA Lamina shape OB Célia Michotey Obversity OB[Adonis] INRA Between 25 and 50% of the area covered 6 Célia Michotey Alpha pinene content INRA a.pinene Leaf carbon content %C[Adonis] %C Célia Michotey INRA Branch angle - rating on 3 INRA ANGn3[Adonis] Célia Michotey ANG_n3 Suberin Ferulic content IBET SuberinFerulicA_CC Inês Chaves Inês Chaves ESP espessura ESP[Adonis] Cork thickness before boiling IBET thickness INRA Withered leaves WI WI[Adonis] Célia Michotey Absolutely straight stem (none) 5 INRA CHALn5[Adonis] Célia Michotey Chalara on the tree - rating on 5 CHAL_n5 Célia Michotey NAAT[Adonis] INRA Number of years with terminal bud accident NAAT INRA Increase of diameter below the apical bud IRD[Adonis] drd Célia Michotey 3 1 to 2 strong curves Internal CO2 concentration Inês Chaves Ci IBET INRA SEL[Adonis] SEL Célia Michotey Phenotypic note Célia Michotey INRA het5 het5[Adonis] max5-min5 PEPc Célia Michotey INRA Enzymatic activity of phosphoenolpyruvate carboxylase PEPc[Adonis] 92 20% of the foliage turned color (color range depending) or fell 4 Média No fork 4 DCI Crown dieback DC[Adonis] DC Célia Michotey INRA/IBET NBCH[Adonis] Célia Michotey INRA NBCH Collar canker number INRA FRUT[Adonis] Fructification abundance 2 FRUT Célia Michotey Célia Michotey INRA BF_prec BF_p[Adonis] Budflush precocity Percentage of late wood pBF Célia Michotey pBF[Adonis] INRA WD Inês Chaves WD[Adonis] Wood density IBET Célia Michotey INRA Total hypertrophied lenticels THL THL[Adonis] D15N[Adonis] d15N INRA delta N15 Delta15N Leaf nitrogen isotope discrimination Célia Michotey INRA NF[Adonis] NF Célia Michotey Number of flushes Top dry cs Inês Chaves Syringaldehyde/Coniferaldehyde contents in cork IBET cork S/G Independant Vegetation/Rock cover Célia Michotey INRA cover1 cov1[Adonis] Medium 1 10% of the fruits reached their usual maximum size, but did not changed color yet 71 Célia Michotey/Inês Chaves DIA_col DCOL DIACOL RCD DIA_C[Adonis] INRA/IBET Root collar diameter CD EHLD[Adonis] EHLD Célia Michotey External hypertrophied lenticels diameter INRA Observed heterozygosity Ho[Adonis] Ho Célia Michotey INRA INRA Temp_MAX Mean maximum temperature Célia Michotey Célia Michotey INRA Lobe width LW[Adonis] LW DCS[Adonis] Crown dieback status DCS Célia Michotey INRA Célia Michotey Slope of the vulnerability curve S50 INRA S50[Adonis] 2 Root biomass INRA/IBET R_mass RDW RDM[Adonis] Root dry mass Célia Michotey/Inês Chaves RDM Total girdling of tree stem with associated mortality of the apex 5 Limonene Limonene content Célia Michotey INRA Inês Chaves Prego-R IBET nail Area_R NS-R[Adonis] Wood inclusions area - Radial section Nail size area - Radial section IBET Pore-R P-R[Adonis] PoresArea_R Pore size - Radial section Inês Chaves BBCH_72 Célia Michotey 20% of fruits reached maximum size INRA 72_NB[Adonis] Sinus width SW Célia Michotey SW[Adonis] INRA 75_NB[Adonis] Célia Michotey INRA BBCH_75 50% of fruits reached maximum size FRU_A[Adonis] FRUC_AB Célia Michotey INRA Fructification abundance Transpiration rate Gs Inês Chaves IBET Célia Michotey INRA gW[Adonis] Stomatal conductance to water vapour gW Inês Chaves IBET WF-l Wood fibers lengh WF-l[Adonis] 86 60% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Célia Michotey HRn[Adonis] HRn Pubescence along the veins INRA Tree gone 5 INRA 78_NB[Adonis] BBCH_78 80% of fruits reached maximum size Célia Michotey INRA/IBET ES Célia Michotey Health status MOR SUR S SUR[Adonis] Survival IBET WF-t WF-t[Adonis] Inês Chaves Wood fibers thickness FLXn5[Adonis] Célia Michotey Flexuosity - rating on 5 INRA FLX_n5 Célia Michotey INRA AIG Needles coloration AIG[Adonis] Crown size crown_size Célia Michotey INRA crown[Adonis] Crown spread LNCa Célia Michotey/Inês Chaves Leaf nitrogen content per leaf area INRA/IBET LNCa[Adonis] Célia Michotey 50% of buds with juvenile coloration INRA 45_NB[Adonis] BBCH_45 INRA 3 carene content 3Carene Célia Michotey PLAG PLAG[Adonis] Célia Michotey INRA Plagiotropy Célia Michotey Deviation from verticality INRA VER[Adonis] VER Leaves completely unfolded (but smaller in size than mature ones), lengthening of the axis of the shoot evident, scales absent 6 tol[Adonis] Célia Michotey Tol Tolerance INRA Célia Michotey Canker INRA Cankers CANK[Adonis] 1 4th quarter (below 23°) FLX_n5b Célia Michotey Flexuosity - rating on 5b FLX5b[Adonis] INRA NBR[Adonis] Célia Michotey Rachis number INRA NBRACH Célia Michotey RQm[Adonis] RQm INRA Rubisco quantity per leaf dry mass Célia Michotey BBCH_38 38_NB[Adonis] INRA Shoots at 80% of their size Célia Michotey INRA b.pinene Beta pinene content Leaf carbone isotope discrimination discriC13 d13C Delta.F Célia Michotey INRA/IBET delta C13 delta-13C D13C[Adonis] d13Cf Delta13C 0 No polycyclism BBCH_16 INRA 60% of leaves/needles out 16_NB[Adonis] Célia Michotey P-Ta[Adonis] Pore size -Tangential section Pore-Ta Inês Chaves PoresArea_Ta IBET Cork plank thickness Inês Chaves Caliber calibre IBET Cal Cal[Adonis] Doubtful 1 Lamina length LL[Adonis] Célia Michotey LL INRA IBET Suberin Enedioic content Inês Chaves SuberinEnedioicA_CC Célia Michotey INRA Enzymatic activity of glycolate oxydase GO GO[Adonis] LPOUS INRA Branch length LB LPOUS[Adonis] Célia Michotey LONG Shoot length 1 Alive and frozen Inês Chaves Pores Frequency PoF[Adonis] IBET Pores Frequency INRA LDR LDR[Adonis] Lobe depth ratio Célia Michotey CLLC[Adonis] Canker_LLC Célia Michotey INRA CCH Canker cumulative length R Plant width at the soil level Célia Michotey INRA R[Adonis] Double feet number Célia Michotey NBDP[Adonis] NBDP INRA Wood vessels diameter Inês Chaves WV-d[Adonis] IBET WV-d NPQ IBET Non-photochemical quenching Inês Chaves BR relevo da barriga Inês Chaves Inner plank surface uniformity Inner plank surface relief BR[Adonis] IBET Wood vessels cell wall thickness Inês Chaves WV-t[Adonis] WV-CW-t IBET IBET Pore size - Transversal section P-Tr[Adonis] Pore-Tr PoresArea_Tr Inês Chaves CHALHOU Célia Michotey INRA CHALH[Adonis] Crown Chalara 1 Less than 10% of the leaves have fallen 12C IBET Wood Carbon 12 Carbon 12 12C[Adonis] Inês Chaves Célia Michotey INRA LS[Adonis] LS Leaf surface 2 Uncertain Between 10 and 25% of the area covered 5 Leaf area Célia Michotey/Inês Chaves LAR LA LA[Adonis] INRA/IBET Pore Length - Tangential section PL-Ta[Adonis] PoresLength_Ta IBET Inês Chaves Pore_L-Ta CM.F Leaf carbon content CM Célia Michotey INRA CM[Adonis] NBASD[Adonis] Célia Michotey Number of years sympodic - straight tree NBASD INRA Instantaneous carboxylation efficiency IBET Inst_Carbon_eff Inês Chaves Grossa (> 18 linhas or > 40 mm) 1 2 Damaged tree 1 ? 6 NL[Adonis] INRA NL Number of lobes Célia Michotey Rubisco quantity per leaf area Célia Michotey RQa[Adonis] INRA RQa REC Harvest Célia Michotey REC[Adonis] INRA nPBD[Adonis] INRA nPriBD Number of primary buds Célia Michotey INRA GOU[Adonis] GOU Epicormic branches Célia Michotey GOURM IBET WAP-t Wood axial parenchyma thickness WAP-t[Adonis] Inês Chaves BBCH_63 63_NB[Adonis] Célia Michotey 30% of flowers sexually mature INRA 40% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. 64 INRA gC[Adonis] Célia Michotey Stomatal conductance to CO2 gC Inês Chaves IBET SuberinGlycerol_CC Suberin Glycerol content Number of day to reach budburst Célia Michotey ND[Adonis] ND INRA IBET N-deb[Adonis] N-debark Inês Chaves Number of debarkings GELN[Adonis] Frost damage note INRA/IBET Célia Michotey GELN 90% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. 69 1 Dominated tree Célia Michotey sabinene INRA Sabinene content Shoot/Root dry mass S:R S/RDM[Adonis] INRA/IBET SDM/RDM S/RDM Célia Michotey/Inês Chaves INRA 88_NB[Adonis] 80% of fruits mature BBCH_88 Célia Michotey IBET Wood inclusions area - Transversal section area NS-Tr[Adonis] nail Area_Tr Inês Chaves Nail size area - Transversal section Prego-Tr 1 Green Inês Chaves IBET Stem length Stem_L Célia Michotey INRA Competition index NCI NCI[Adonis] Leaf water content Célia Michotey/Inês Chaves LWC[Adonis] LWC% INRA/IBET WoodyPlant ontology BF_score_n8 INRA DEBFAGUS BFSn8[Adonis] Budflush scoring - rating on 8 Célia Michotey RAM Célia Michotey RAM[Adonis] Branching degree INRA Lf Leaf number Inês Chaves Lf[Adonis] IBET 5 No fork FRUCN[Adonis] Fructification note Célia Michotey FRUCN INRA a.copaene INRA Alpha copaene content Célia Michotey Inês Chaves Pore Roundness - Tangential section IBET Pore_Round-Ta PoresRoundness_Ta PR-Ta[Adonis] SHDM[Adonis] INRA Shoot dry mass SHDM Célia Michotey ? 3 ma Maximal ring density Célia Michotey ma[Adonis] INRA Célia Michotey BBCH_06 INRA 10% of the bud burst 06_NB[Adonis] fch Forks fts Cracks Monoecious (both male and female) 0 Totally dry plant 4 1 Low allelic diversity Angle greater than 55° 4 Célia Michotey INRA LCH Collar Chalara CHALC[Adonis] CHALCOL NSEC[Adonis] SECN Drought damage note Célia Michotey INRA ID Célia Michotey ID[Adonis] INRA Identification INRA 40% of leaves/needles out BBCH_14 14_NB[Adonis] Célia Michotey Petiols without leaves Célia Michotey INRA PETIOL P_F[Adonis] P_F INRA/IBET LDM LDW Leaf biomass Célia Michotey/Inês Chaves L_mass Leaf dry mass LDM[Adonis] Hm Célia Michotey INRA/IBET HTm[Adonis] HTm Tree total height in m Canker is developed along less than 20% of stem circumference 1 Fis Fixation index Célia Michotey INRA Fis[Adonis] INRA He2[Adonis] He_bis Expected heterozygosity Célia Michotey Polycyclism only on the terminal shoot 1 DBRA[Adonis] Branche diameter Célia Michotey DBRA GBRA INRA C/N[Adonis] Célia Michotey C/N INRA C:N C/N Leaf carbon-to-nitrogen ratio INRA TPCa[Adonis] Célia Michotey Total protein content per leaf area TPCa 4 51-75% buds-burst and have visible needles Célia Michotey BBCH_74 INRA 40% of fruits reached maximum size 74_NB[Adonis] Inês Chaves CR-w[Adonis] IBET CR-w Cork ring width Dry matter PDW TDM[Adonis] INRA/IBET Plant dry weight Total_mass Célia Michotey/Inês Chaves TDM Plant biomass 1 NBAMF Number of years monopodic - forked tree Célia Michotey INRA NBAMF[Adonis] Crown completely yellow 2 INRA RQn RQn[Adonis] Rubisco quantity per gram of nitrogen Célia Michotey NailInclusionsCoef_Ta PN-Ta[Adonis] Nail size percentage - Tangential section % Prego-Ta Inês Chaves Wood inclusions percentage - Tangential section IBET % nail Area_Ta Célia Michotey Harvest date RECD INRA RECD[Adonis] Célia Michotey stone_content stone[Adonis] INRA Soil stone content BBCH_34 INRA 34_NB[Adonis] Shoots at 40% of their size Célia Michotey BBCH_66 Célia Michotey INRA 60% of flowers sexually mature 66_NB[Adonis] SEN SEN[Adonis] INRA Senescence Célia Michotey Célia Michotey INRA expo[Adonis] aspect Individual aspect Wood Hydrogen 1 1H[Adonis] Hydrogen 1 Inês Chaves 1H IBET Célia Michotey ARMILL ARM INRA Armillaria ARM[Adonis] Specific leaf area SLAR SLA INRA/IBET SLA[Adonis] Célia Michotey/Inês Chaves mer_ls US[Adonis] US Célia Michotey INRA Uredinia size Woodp[Adonis] Inês Chaves IBET Woodpecker Woodpecker Pica-pau Chl a/b Inês Chaves IBET Chlorophyll a to b ratio Amean Amean[Adonis] Célia Michotey Mean assimilation rate INRA Célia Michotey Amax[Adonis] Maximum assimilation rate Amax INRA 61_NB[Adonis] 10% of flowers sexually mature Célia Michotey INRA BBCH_61 GRA GRA[Adonis] Célia Michotey Seeds INRA Gr INRA 73_NB[Adonis] BBCH_73 Célia Michotey 30% of fruits reached maximum size STOM[Adonis] Célia Michotey INRA STOM Stomatal density NF NBF NBFO Célia Michotey Forks number INRA NbFourches NBFO[Adonis] Smooth bark, no cracks 0 deltaC ICIR[Adonis] deltaCIRC Célia Michotey Circumference increment deltaC.F ICIR deltaC.I INRA BF_B[Adonis] Bud burst Célia Michotey BF_score_B INRA DF_n5 Defoliation - rating on 5 DF_n5[Adonis] Célia Michotey INRA Alive 0 Célia Michotey 10% of shoots at growth stop BBCH_40 INRA 40_NB[Adonis] NBAMD Célia Michotey INRA NBAMD[Adonis] Number of years monopodic - straight tree At least 50% of buds have a juvenile coloration 45 INRA Budflush scoring - rating on 3 BF_score_n3 Célia Michotey BFSn3[Adonis] 37 Shoots reached 70% of their final size (deducted a posteriori) surf INRA Ring surface surf[Adonis] Célia Michotey INRA MARn6[Adonis] Marcescence - rating on 6 MAR_n6 Célia Michotey INRA Ramicorn number NBRA NBRA[Adonis] Célia Michotey Célia Michotey Enzymatic activity of hydroxypyruvate reductase INRA HPR[Adonis] HPR IBET PR-R[Adonis] Pore_Round-R PoresRoundness_R Inês Chaves Pore Roundness - Radial section Average tree 2 Large number of merged and uncountable lenticels 3 Célia Michotey INRA a.humulene Alpha humulene content 0 On no branches CIR_B[Adonis] CIRC_B CIBAS CIR_B CCO Célia Michotey CIR_Base INRA CBAS Tree circumference at the collar Pores Length Pores Length Inês Chaves IBET PoLe[Adonis] Percentage of tension wood WTP[Adonis] Célia Michotey/Inês Chaves WT% INRA/IBET 85_NB[Adonis] Célia Michotey 50% of fruits mature BBCH_85 INRA % Pore-R % Pore size - Radial section IBET PorosityCoef_R PP-R[Adonis] Inês Chaves Fork(s) only in the lower half of the tree height 2 NBUC NBUC[Adonis] Célia Michotey INRA Growth unit number 5 to 25% of the foliage remaining 1 Célia Michotey INRA BBCH_36 Shoots at 60% of their size 36_NB[Adonis] BBCH_92 Célia Michotey 20% of leaves faded or fallen INRA 92_NB[Adonis] Marcescence - rating on 4 INRA MAR_n4 MARn4[Adonis] Célia Michotey camphene Célia Michotey INRA Camphene content Alive 0 INRA Syllep.I Number of sylleptic shoots Syllep Syllep.F RAMA Sylle[Adonis] Célia Michotey Syllep.UK Célia Michotey BBCH_95 INRA 50% of leaves faded or fallen 95_NB[Adonis] Medium ring density mid Célia Michotey INRA mid[Adonis] 2 Fork in middle third of the tree Inês Chaves N-2W_lent Lenticels : number of cell with secondary wall deposition N-2WL[Adonis] IBET 17 Broadleaves: the first leaves are spread on about 70% of the crown. Pines: 70% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 70% of buds with open-brushed needles INRA BarkT_mean Bark thickness mean Célia Michotey BT_m[Adonis] Chalara difficult to see or visible but weak 1 BBCH_08 Leaves comes out of 10% of buds Célia Michotey 08_NB[Adonis] INRA Célia Michotey Rubisco content in leaves INRA CRL RQ RQ[Adonis] Célia Michotey Petiole ratio INRA PR[Adonis] PR 5 100% of the foliage remaining, green tree 5 Thin and few branches Fork INRA FO FO[Adonis] Célia Michotey C_EL HD C_El[Adonis] Célia Michotey El Slenderness INRA Célia Michotey INRA LCC LCC[Adonis] Leaf chlorophyll content Soluble protein content per leaf dry mass SPCm Célia Michotey SPCm[Adonis] INRA Number of latent secondary buds nSecLBD Célia Michotey INRA nSLBD[Adonis] 60_NB[Adonis] BBCH_60 Célia Michotey INRA First flowers sexually mature 5 Very visible leaves 10 to 50% of the leaves have fallen 2 Célia Michotey BBCH_67 67_NB[Adonis] INRA 70% of flowers sexually mature Game damage GIB[Adonis] Célia Michotey INRA/IBET GIB DES Number of dry years on the stem Célia Michotey INRA DES[Adonis] 50% of smooth bark, moderate cracks 2 INRA Year reference whorl ANVERE Célia Michotey AVR[Adonis] % Pore size - Transversal section PP-Tr[Adonis] PorosityCoef_Tr Inês Chaves % Pore-Tr IBET 20% of fruits mature 82_NB[Adonis] Célia Michotey INRA BBCH_82 72 20% of the fruits reached their usual maximum size, but did not changed color yet girdling_index CGI[Adonis] Canker_GI Célia Michotey INRA/IBET Canker girdling index Girdling.index Budset date in cumulative night length Célia Michotey BS_date_cnl INRA BScnl[Adonis] date_cnl Tree circumference at 1m CIR1[Adonis] INRA/IBET Circum.I Célia Michotey/Inês Chaves Girth at 1m Circum.UK Circum.F CIR1 Canopy projection INRA canopy_projection canop[Adonis] Célia Michotey INRA BBCH_84 84_NB[Adonis] 40% of fruits mature Célia Michotey Inês Chaves N-div_lent Lenticels : number of cells dividing IBET N-DL[Adonis] BBCH_32 Shoots at 20% of their size Célia Michotey INRA 32_NB[Adonis] Fork in upper third of the trre 3 FO_index Fork_index Célia Michotey INRA FO_i[Adonis] Forking index Inês Chaves SuberinOleicA_CC IBET Suberin Oleic content -9 Dead Chrysomela INRA CLCA[Adonis] Chrysomela leaf consumed area Célia Michotey 1 Angle between 0 and 30° 10 Broadleaves: the first leaves of the crown are spread. Pines: first buds very elongated with the first needles coming out of the sheath the sheath glued in pairs. Other conifers: first buds showing open-brushed needles. ? 5 96_NB[Adonis] BBCH_96 Célia Michotey 60% of leaves faded or fallen INRA FLX_n3 FLXn3[Adonis] INRA Célia Michotey Flexuosity - rating on 3 Spread leaves, long shoot 8 Number of individuals NbI NbI[Adonis] Célia Michotey INRA NDEFV[Adonis] Célia Michotey NBDEF_V INRA Whorl defects Main axis completely dry from the ground, some healthy shoots 2 Célia Michotey ANGn4[Adonis] ANG_n4 INRA Branch angle - rating on 4 Stem_D Stem diameter Inês Chaves IBET COUL Célia Michotey Leaf color LC INRA LC[Adonis] BBCH_83 83_NB[Adonis] 30% of fruits mature Célia Michotey INRA Low marcescence 1 64_NB[Adonis] BBCH_64 40% of flowers sexually mature Célia Michotey INRA 10 Best color Célia Michotey INRA rEpiBC Epicormic branches per epicormics rEBC[Adonis] 5 100 % feuillé, bien vert No leaves have fallen, the tree is still green 5 1 On some branches Célia Michotey LWR[Adonis] Lobe width ratio INRA LWR High 60 - 80% Inês Chaves Wood radial parenchyma thickness IBET WRP-t WRP-t[Adonis] No leaves have fallen 0 NbA[Adonis] NbA Célia Michotey INRA Number of alleles Little 5 - 20% 7 -9 Dead No hypertrophied lenticels 0 Healthy 1 Below 30° (steep) 1 0 Apical bud red brown Inês Chaves An_LightCurve_leaf Photosynthetic rate - light curve IBET An_LightCurve damage to the n-1 shoot 1 Mean flush length MFL Célia Michotey MFL[Adonis] INRA INRA Célia Michotey NBASF[Adonis] NBASF Number of years sympotic - forked tree 1 Dormant winter bud (late flushing) Volume INRA Vol Vol[Adonis] Célia Michotey Leaf_An_curve IBET Leaf photosynthesis light response curve Inês Chaves d.cadidene Delta cadidene content Célia Michotey INRA Average rainfall Célia Michotey INRA Prec CHALinf Chalara on the tree lower part Célia Michotey CHALB INRA CHAB[Adonis] BBCH_00 INRA 00_NB[Adonis] Dormant winter buds Célia Michotey INRA POLY Polycyclism nature POLY[Adonis] Célia Michotey INRA ESBR ESBR[Adonis] Célia Michotey Health status red strip AVP[Adonis] Ability to vegetative propagation Célia Michotey INRA AVP 3 A lot of fruits in a small section of the crown More than 2 very strong curves 1 75 to 90% of the foliage remaining 4 Célia Michotey INRA HFO HTF HFO[Adonis] Height fork Significant damages 3 Dry or broken crown 1 INRA nP Number of primary branching nP[Adonis] Célia Michotey b.myrcene INRA Beta myrcene content Célia Michotey 0 No fruits Leaning tree 3 Célia Michotey BBCH_19 INRA 19_NB[Adonis] 90% of leaves/needles out BS[Adonis] INRA BS Lamina basal shape Célia Michotey Soluble protein content per leaf area SPCa[Adonis] Célia Michotey SPCa INRA Célia Michotey INRA BBCH_79 90% of fruits reached maximum size 79_NB[Adonis] Célia Michotey VI_BF[Adonis] varintraBF INRA Variance of late wood density values Latent Period Célia Michotey INRA LD[Adonis] LD rege[Adonis] Natural regeneration regeneration Célia Michotey INRA Survival SURb SURb[Adonis] ESb Célia Michotey Health status INRA Célia Michotey INRA BBCH_13 30% of leaves/needles out 13_NB[Adonis] NBN NBNPRO Célia Michotey INRA NBN[Adonis] Nests number Célia Michotey a.cubebene INRA Alpha cubebene content HTrunk HTr[Adonis] Célia Michotey INRA Height trunk SUR_R[Adonis] SUR_Rate Survival rate Célia Michotey INRA 80_NB[Adonis] INRA Célia Michotey First fruits mature BBCH_80 INRA/IBET Célia Michotey/Inês Chaves WC% Percentage of compression wood WCP[Adonis] Female 2 INRA NV[Adonis] Number of intercalary veins NV Célia Michotey KS KS[Adonis] Célia Michotey Xylem hydraulic conductivity INRA 70 The first fruits reached their usual maximum size, but did not changed color yet Fork 6 2 Bud enlarge and starting to flush, first green is visible at the tip INRA Célia Michotey FRUC_BBCH FR_NB[Adonis] Fructification BBCH LCCm[Adonis] Célia Michotey LCCm INRA Chlorophyll content per leaf dry mass Very late 4 INRA DV_NB[Adonis] DEV_BBCH Célia Michotey Growth BBCH BBCH_12 Célia Michotey 12_NB[Adonis] INRA 20% of leaves/needles out Buds ready to burst BBCH_03 Célia Michotey INRA 03_NB[Adonis] INRA Célia Michotey Leaf mass per leaf area LMA[Adonis] LMA 2 Inflated bud INRA 93_NB[Adonis] 30% of leaves faded or fallen Célia Michotey BBCH_93 Absence: no recruit visible 1 30% of the fruits reached their usual maximum size, but did not changed color yet 73 3 50 to 100% of the leaves have fallen 88 80% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) 62 20% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. INRA 70% of fruits reached maximum size BBCH_77 Célia Michotey 77_NB[Adonis] BBCH_87 INRA 70% of fruits mature 87_NB[Adonis] Célia Michotey SDM[Adonis] S_mass INRA/IBET SDM SDW Stem biomass Stem dry mass Célia Michotey/Inês Chaves 80% of leaves/needles out INRA BBCH_18 18_NB[Adonis] Célia Michotey Célia Michotey INRA ROU[Adonis] Rust ROU 75 50% of the fruits reached their usual maximum size, but did not changed color yet 4 ? Célia Michotey mpond[Adonis] mpond INRA Mean ring density INRA REP Number of repetitions Célia Michotey REP[Adonis] IBET Hydrogen 2 2H 2H[Adonis] Wood Hydrogen 2 Inês Chaves COMP Célia Michotey COMP[Adonis] Competition INRA 1 Less than 10% of the leaves have fallen Crown starts yellowing 3 DESN[Adonis] Stem drying up grading Célia Michotey INRA/IBET DESN Presence of attack and necrosis on a lateral shoot 4 Boa 3 Célia Michotey BBCH_62 INRA 20% of flowers sexually mature 62_NB[Adonis] 3 Presence of attack and necrosis on one or more main axes 16 Broadleaves: the first leaves are spread on about 60% of the crown. Pines: 60% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 60% of buds with open-brushed needles Célia Michotey INRA Conifers budflush scoring BF_score_CO BF_CO[Adonis] IBET cork H/S/G Hydroxyphenylaldehyde/Syringaldehyde/Coniferaldehyde contents in cork Inês Chaves Small 1 07_NB[Adonis] Célia Michotey INRA BBCH_07 50% of buds burst Lamina largest width INRA WP[Adonis] WP Célia Michotey PIL[Adonis] Penetration opposition Célia Michotey PIL INRA Célia Michotey BF_date Budburst date BF_d[Adonis] INRA Budflush date AR_bis AR2[Adonis] Célia Michotey Allelic richness INRA Assimilation rate Célia Michotey A INRA A[Adonis] INRA Buds swelling BBCH_01 01_NB[Adonis] Célia Michotey FLO_BBCH INRA FL_NB[Adonis] Blossoming BBCH Célia Michotey INRA DGB Diameter largest branch Célia Michotey DGB[Adonis] Budflush Budflush.I BF_BL[Adonis] Bud burst Broadleaves budflush scoring BF_score_BL DEB Bud break Célia Michotey Budflush.UK INRA Budflush.F Cut 1 10% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) 81 na Missing data INRA 71_NB[Adonis] 10% of fruits reached maximum size BBCH_71 Célia Michotey Nothing 0 39 Shoots reached 90% of their final size (deducted a posteriori) Green white bud, beginning of leaves 4 76–100% buds-burst and have visible needles 5 Fork in lower third of the tree 1 1 All buds dormant or just enlarged BiomF Célia Michotey BioF INRA Foliar biomass BioF[Adonis] Alive and unfrozen 0 date15.F Célia Michotey date15.3 INRA date15.I date15.UK date15.3.F BS_date BS_d[Adonis] Budset date date15 1 Less than 10% of affected shoots 61 10% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. IBET eels Cork Eelness eels[Adonis] Inês Chaves Inês Chaves RWC IBET Root water content 4 3 3/4 of the total height of the plant dry Célia Michotey INRA August shots AC Growth stop AC[Adonis] 4 A lot of fruits in two or more sections of the crown Marcescent 2 Moderate to strong bends (severe) 2 Inês Chaves WRP-h[Adonis] IBET Wood radial parenchyma high WRP-h IBET WID Wood infradensity Inês Chaves WID[Adonis] 2 Superior b.caryophyllene INRA Beta caryophyllene content Célia Michotey More than 5 cm of diameter at the insertion point 1 Branching - rating on 5 scales BRAn5[Adonis] Célia Michotey INRA BRA_n5 SuberinEctadecanedioidA_CC IBET Suberin Ectadecanedioid content Inês Chaves Célia Michotey Forks number - x-ray nFork[Adonis] nFork INRA Suberin Dihydroxyoctadenedioic acid content Inês Chaves SuberinThreo2OHoctadecanoicA_CC IBET 3 White bud (hair) Célia Michotey INRA nEBC[Adonis] Number of epicormic branches nEpiBC IBET ESP_B[Adonis] cork thickness after boiling ESP_B espessura depois de cozido Inês Chaves Canker_LL canker_length Canker lesion length Célia Michotey INRA/IBET CLL[Adonis] Canker.length enguy enguy[Adonis] Cork discontinuities Inês Chaves IBET 11 Broadleaves: the first leaves are spread on about 10% of the crown. Pines: 10% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 10% of buds with open-brushed needles Wood width IBET W-w W_w[Adonis] Inês Chaves 60° 3 Secateur knocks number Célia Michotey TAI INRA NBS[Adonis] NBS Célia Michotey INRA Temp_MIN Mean minimum temperature Low 20 - 40% dc Crown dieback 2 Doubtful WUE Inês Chaves WUE[Adonis] IBET Water use efficiency Célia Michotey DP[Adonis] INRA DP Double feet 10% of the foliage turned color (color range depending) or fell 91 EP[Adonis] Epidermal cells per adaxial leaf area Célia Michotey EP INRA Crown without damage 0 2 3rd quarter (between 23° and 45°) Between 60° and 90° (plain) 3 No damage 1 00 Dormant winter bud Célia Michotey INRA LP Leaf perimeter LP[Adonis] 1 Fork gone but transformed into a large branch SACL[Adonis] SACL Célia Michotey INRA Leaf saccharose content 0 Fork gone and not transformed into a large branch Inês Chaves Suberin Hydroxyalkanoic content IBET SuberinAlkanoicA_CC Dominant tree 3 3 2nd quarter (between 45° and 67°) 2 Bud swelling and expanding with scales slightly diverging, presence of one or more droplets of balsam 2 Chalara easy to see Célia Michotey depth[Adonis] soil_depth INRA Soil depth An/Ci Leaf carboxylation efficiency Inês Chaves IBET 36 Shoots reached 60% of their final size (deducted a posteriori) CHALn3[Adonis] Chalara on the tree - rating on 3 CHAL_n3 Célia Michotey INRA 4 The needle stretches up to twice the size of the bud, the needles are still tight to the shoot if bud scales are still there or they are splayed out 30% of the foliage turned color (color range depending) or fell 93 0 ? Célia Michotey nEpis INRA nE[Adonis] Number of epicormics INRA/IBET Célia Michotey/Inês Chaves WCC[Adonis] WCC Cellulose wood composition Flor 1 5 Delgadinha (6 to 8 linhas or 14 to 18 mm) 3 Bud scales start to burst, first needles visible Syringaldehyde/Coniferaldehyde contents in wood IBET wood S/G Inês Chaves absence 0 Célia Michotey INRA gwmax Maximum stomatal conductance gwmax[Adonis] Numerous branches concentrated at whorls 2 3 Very marcescent HGB HGB[Adonis] Célia Michotey INRA Height largest branch varintraBI Célia Michotey Variance of early wood density values INRA VI_BI[Adonis] %Pores Inês Chaves PP[Adonis] IBET Cork Porosity 1 Irregular 9 3 Fork(s) only in upper half of the tree height 6 ? Broadleaves: the first leaves are spread on about 30% of the crown. Pines: 30% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 30% of buds with open-brushed needles 13 Orthotropic 1 Refugo 7 09_NB[Adonis] BBCH_09 Célia Michotey 50% of buds with leaves coming out INRA Carotenoid content per leaf dry mass Célia Michotey CARm CARm[Adonis] INRA MAR_coef Célia Michotey MARc[Adonis] Marcescence coefficient INRA NLV Total number of leaves Célia Michotey INRA NLV[Adonis] Célia Michotey Chalara influence on leaves INRA CHAL_nbF C_nbF[Adonis] 4 Fairly straight, slightly crooked in one direction (weak) 4 Beautiful tree, to keep, deserves to be selected entity 75 % à 90 % du feuillage restant 75 to 100% of the leaves have fallen 4 3 Fairly large but few branches per whorl 3 75% of crack bark VIC[Adonis] INRA Intra-ring variance Célia Michotey varintracerne MWi MWi[Adonis] Mean intrinsic water use efficiency Célia Michotey INRA Between 50 and 75% of the area covered 7 INRA DEVFO DEVFO[Adonis] Become of fork Célia Michotey 1 1/4 of the total height of the plant dry 2 On all branches Polycyclism on the terminal and lateral shoots and these lateral shoots are codominant 4 Canker is developed along between 20% and 40% of stem circumference 2 Shoots reached 80% of their final size (deducted a posteriori) 38 15 Broadleaves: the first leaves are spread on about 50% of the crown. Pines: 50% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 50% of buds with open-brushed needles IBET AnII_Ef Photosystem II operating efficiency Inês Chaves INRA Plant defects D_P DEF DEF[Adonis] Célia Michotey 1 Forks developed both in upper and in lower half of the tree height Wood carbon 13 Célia Michotey/Inês Chaves 13C d13Cc 13C[Adonis] INRA/IBET Carbon 13 TBD Diameter of terminal bud Célia Michotey TBD[Adonis] INRA Inês Chaves Leaf relative water content IBET LRWC More than 15-20 hypertrophied lenticels 2 At least 10% of buds have the tips of the first leaves that extend beyond the tip of the bud scales 08 Célia Michotey DF_n3 Defoliation - rating on 3 INRA DF_n3[Adonis] LWC Inês Chaves Leaf water content IBET 50 to 75% of the leaves have fallen 3 07 At least 50% of the foliar or mixed buds have burst. The green tips or bases of the leaves appear between the scales. In pines, the bud lengthens and the needles remain inside their sheath, which takes on a silvery hue; the green base of the needles can be seen. In other conifers, the needles begin to be visible. 4 Canker is developed along between 60% and 80% of stem circumference Tree growth Vigor GR Célia Michotey GR[Adonis] INRA Between 30° and 60° 2 79 90% of the fruits reached their usual maximum size, but did not changed color yet Célia Michotey INRA SEN_BBCH Senescence BBCH SE_NB[Adonis] Célia Michotey INRA Terpinolene Terpinolene content Start of shoot growth 30 2 Bud-burst, first green is visible (intermediate) INRA max5 Mean strongest density values Célia Michotey max5[Adonis] preguentas/madeirentas Inês Chaves IBET preguentas/madeirentas 3 Ill 0 Null Tree to cut 1 Célia Michotey INRA Total pigments content per leaf area TPgCa[Adonis] TPgCa 5 Shoots reached 30% of their final size (deducted a posteriori) 33 FRU_R[Adonis] FRUC_REG Célia Michotey Fructification regularity INRA More than 2 rolled-up young leaves 3 81_NB[Adonis] Célia Michotey 10% of fruits mature INRA BBCH_81 3 Acute angle less than 45 ° 4 100% of crack bark, moderate cracks 30% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) 83 Célia Michotey LN/LC[Adonis] INRA Ratio leaf nitrogen to leaf carbon LN/LC INRA Alive neighboring trees NBVOIS NBV[Adonis] Célia Michotey 3 2 to 3 cm of diameter at the insertion point 4 Suberin Trihydroxyoctadecanoic content Inês Chaves SuberinThreo3OHoctadecanoicA_CC IBET ? 2 ACC Célia Michotey Annual increase INRA ACC[Adonis] Petiole length PL[Adonis] Célia Michotey INRA PL 1/2 of the total height of the plant dry 2 Less than 15-20 hypertrophied lenticels 1 68_NB[Adonis] Célia Michotey 80% of flowers sexually mature BBCH_68 INRA Célia Michotey Branch angle - rating on 5 ANG_n5 INRA ANGn5[Adonis] 0 Straight HRf HRf[Adonis] INRA Pubescence in lamina central part Célia Michotey 3 Slight to moderate bends in different directions (weak) F1 fully stretched comparable to older leaves apical but of older leaves, apical bud of fully closed between green and red 0,5 98 80% of the foliage turned color (color range depending) or fell 1 Célia Michotey INRA NBPS[Adonis] Number of additional feet NBPIEDSUP Strong meander 2 INRA Gamma cadidene content g.cadidene Célia Michotey 50 to 75% of the foliage remaining 3 Multi strands mbs 2 Shoots reached 40% of their final size (deducted a posteriori) 34 Bark roughness BarkR Célia Michotey INRA BarkR[Adonis] 5 1 Dead Célia Michotey Height.I INRA/IBET HT[Adonis] Height.UK H HT Height.F TH Tree total height nPriLBD Célia Michotey INRA Number of latent primary buds nPLBD[Adonis] At least 50% of buds are lignified and mature 49 60% of the foliage turned color (color range depending) or fell 96 Late 3 4 Less than 10% of the area covered Célia Michotey mi INRA mi[Adonis] Minimal ring density IBET Polysacharide cork composition Inês Chaves Sacharides_CC INRA P50[Adonis] Xylem pressure P50 Célia Michotey High allelic diversity 3 IBET Inês Chaves Soil water availability SWA 77 70% of the fruits reached their usual maximum size, but did not changed color yet Diameter below terminal bud RD RD[Adonis] Célia Michotey INRA Fork still present at the given height [fork height] 4 < 5% None 10 to 25% of the leaves have fallen 2 1 Angle close to the right angle Height first dead branch HBM HBM[Adonis] Célia Michotey INRA High heterozygosity 3 Angle between 40 et 55° 3 4 1 to 2 light curves 4 Delgada (10 to 12 linhas or 22 to 27 mm) 60% of the fruits reached their usual maximum size, but did not changed color yet 76 4 Thin branches but distributed along the shoot 3 1st quarter (between 67° and 90°) 4 6 2 Medium heterozygosity Kept 0 1 Dying tree 2 2 Up to 50% of affected shoots Missing data na 1 120° Broadleaves: the first leaves are spread on about 80% of the crown. Pines: 80% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 80% of buds with open-brushed needles 18 5 The needle bundle starts to loosen, shoot are growing 3 Beautiful tree, to keep 3 Canker is developed along between 40% and 60% of stem circumference Célia Michotey INRA TE TE[Adonis] Terminal bud dead Very high 80 - 95% 1 F1 fully stretched with juvenile aspect, F2 comparable to older leaves apical bud not fully closed 10 Perfect Moderate damages 2 01 Most leaves or mixed buds began to swell 2 Medium allelic diversity Other 8 acronym 82 20% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) IBET Polyphenols cork composition Phenols_CC Inês Chaves Maximum water use efficiency Célia Michotey MaxWi INRA MaxWi[Adonis] Straight 5 3 meia-marca (12 to 14 linhas or 27 to 32 mm) 2 Scattered: few, scattered individuals The majority of the flower buds have begun to open 53 55 The majority of floral buds have emerged from the buds but are closed. Flowers with petals: the majority of flower buds have emerged from the buds and are still closed, but the colour of the petals is visible. Male flowers in catkins: the catkins are at the end of lengthening, the scales begin to move apart. Other flowers: stamens begin to be visible. Nothing, no chalara 0 12 Broadleaves: the first leaves are spread on about 20% of the crown. Pines: 20% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 20% of buds with open-brushed needles Dormant winter bud 1 Célia Michotey Forking score - rating on 4 INRA FOSn4[Adonis] FO_score_n4 Groups: presence of scattered groups 3 2 Acute angle greater than 45 ° Broadleaves: the first leaves are spread on about 40% of the crown. Pines: 40% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 40% of buds with open-brushed needles 14 0 no damage 2 1-25% buds-burst and have visible needles are visible 8 Chalara very present 3 40 At least 10% of the shoots show signs of growth arrest (appearance of morphological markers) 2 Abundant A few fruits in a small section of the crown 1 Dormant winter bud 1 89 90% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) No branch 0 1 Dormant winter bud completely enveloped by the scales (perulae) Smooth bark, some cracks 1 Medium 40 - 60% Shoots reached 10% of their final size (deducted a posteriori) 31 3 Accidentally cut Bud sprouting with tips of the small leaves emerging out of the scales, first green is visible 3 1 presence 3 3 to 4 cm of diameter at the insertion point 2 Little early 30% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. 63 2,5 2 rolled-up young leaves at equal height 6 Fraca 2 damage to the n-1 shoot and laterals recovery 67 70% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. 90° 2 Tree unharmed, not attacked 5 2 Marca (14 to 18 linhas or 32 to 40 mm) Polycyclism on lateral shoots only 3 2 A few fruits in two or more sections of the crown Light meander 1 87 70% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Crown dieback 7 Very numerous branches, large, concentrated double at the whorls and/or distributed along the shoot 1 4 Male 1 Low growth 1 66 60% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. Broadleaves: the first leaves are spread on about 90% of the crown. Pines: 90% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 90% of buds with open-brushed needles 19 3 Up to 75% of affected shoots 0 Naked tree (completely or with some top marcescent needles) 2 Codominant tree -5 Doubtful Vigorous 3 4 Buds completely opened with leaves still clustered together but flushing, scales still present Completely defoliated 0 9 Game damage Crown completely green 4 78 80% of the fruits reached their usual maximum size, but did not changed color yet Shoots reached 50% of their final size (deducted a posteriori) 35 50% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. 65 2 Regular 70% of the foliage turned color (color range depending) or fell 97 The majority of the flower buds began to swell 51 Healthy tree 0 5 Big 2 Less vigorous 1 1 pollarding At least 10% of the bud burst. Leaves appear between the scales. In pines, the bud lengthens and the needles remain inside their sheath which takes a silver tint; we see the green base of the needles. In other conifers, the needles begin to be visible. 06 Low heterozygosity 1 95 50% of the foliage turned color (color range depending) or fell Leaves expanding and diverging with their blades sill rolled up, scales may be present or absent 5 Shoots reached 20% of their final size (deducted a posteriori) 32 3 26-50% buds-burst and have visible needles 1 No straight stem (severe) 85 50% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Hanging down (> 90°) 5 attribute Winter dormant flower bud 50 Angle between 30 and 40° 2 3 Many and/or large branches 80% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. 68 40% of the foliage turned color (color range depending) or fell 94 09 At least 50% of the buds have the tips of the first leaves that extend beyond the tip of the scales, which may still be present. The leaves begin to individualize. In pines, the needles begin to pierce the sheath. In other conifers the first buds show individualized needles in closed brush. Plagiotropic 0 5 Dead tree 2 More than 1 pollarding Tree completely dry, the main axis and lateral shoots remain 1 3 pé de linha Measured in linhas (1 linha = 2,256 mm) with a kind of ruler called pé de linha Wood parenchyma protocol None mm Fixation index Fis Assessment of the panmixia (or panmicticism) standard deviation. It is the ability of individuals in a population to interbreed without restrictions; individuals are able to move about freely within their habitat, possibly over a range of hundreds to thousands of miles, and thus breed with other members of the population population panmixia enzymatic activity SAR Specific activity of Rubisco in leaves leaf Specific activity of rubisco in leaves Suberin Trihydroxyoctadecanoic content Suberin Trihydroxyoctadecanoic content cork suberin content Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Trihydroxyoctadecanoic acid Growth BBCH scoring scale Leaf photosynthesis light response curve Leaf photosynthesis light response curve Leaf_An_curve Measured from soil to the first branches of the canopy Trunk height protocol transpiration leaf Gs Transpiration rate Transpiration rate leaf Ci CO2 Internal CO2 concentration Sub-stomatal cavity CO2 concentration measured under light curve allele quantity NbA Assessment of alleles quantity in the population Alleles quantity Dry weight protocol Dry weight (g) was determined after drying plant material at 70 ◦C (until a constant weight was achieved) branching Branching degree RAM plant Branching degree Ring surface wood ring surface surf Surface of the rings, the layer of wood produced by a single years growth of a woody plant Gradians Shoots shoot Resprout quantity Assessment of the quantity of resprouts or shoots more than 30cm-long after coppicing quantity biomass Shoot/Root dry mass shoot/root Shoot to Root dry weight ratio S/RDM Assessment of seeds quantity quantity GRA seed Seeds quantity fruit Assessment of the fructification Fructification FRUC fructification axial parenchyma WAP-h Wood axial parenchyma high high Wood axial parenchyma high AVP Ability to vegetative propagation Assessment of the ability to vegetative propagation, any form of asexual reproduction occurring in plants in which a new plant grows from a fragment of the parent plant or a specialized reproductive structure plant Assessment of the marcescence, the retention of dead plant organs that normally are shed such as the withering of leaves without falling off Marcescence MAR marcescence Calendar day selection Individuals sampling for a specific study ECH Sampling plant Cork defects - Tangential section protocol Defects are quantified in the two tangential of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to Tangential surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas were measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects were measured separately: cork porosity and nail inclusions. BBCH_72 evaluation Assessment of the date when 20% of the fruits reached their usual maximum size, but did not changed color yet quantity Number of individuals in the population plant Number of individuals NbI Budburst scoring scale None Nail size protocol BBCH_37 evaluation Assessment of the date when shoots reached 70% of their final size (deducted a posteriori) quantity Assessment of growth units quantity growth unit Growth unit quantity NBUC Assessment of primary branching quantity Primary branching quantity nP primary branching quantity Assessment of the date when the first flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_60 evaluation Frost damages scoring scale Suberin Dihydroxyoctadenedioic acid content Suberin Dihydroxyoctadenedioic acid content suberin content Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Dihydroxyoctadenedioic acid cork Lobe depth protocol None Mass percentage monopodic plant Assessment of monopodic growth. The main or primary axis continues its original line of growth giving off successive axes or lateral branches from the apex of the main meristem. Monopodic growth monopodic Visual assessment with a reference scoring scale Visual scoring Crown chalara scoring scale default whorl Number of whorls whith 1 default (fork, ramicorn…). A whorl or verticil is an arrangement of at least 3 sepals, petals, leaves, stipules or branches that radiate from a single point and surround or wrap around the stem. Whorl defects DEF_V Count Measurement None Shape scoring scale Canker girdling lesion Lateral extent of a canker lesion, an area of dead tissue which grow slowly and is caused by bacteria or fungus stem Canker_G Dry matter Weight of the plant dry matter biomass TDM plant photosystem II leaf Photosystem II operating efficiency AnII_Ef Photosystem II operating efficiency Soil depth depth soil soil_depth Soil depth around the tree Calliper - largest branch protocol Measured below the largest branch of the tree with a calliper graduated in millimeters Numerical unknown - 3 decimals Debarkings quantity N-debark cork Assessment of debarkings quantity debarking Curves scoring scale on 5 Measured at 130 cm from the ground (approximately breast height) with a calliper graduated in millimeters. If the tree has more than one trunk all of them have to be measured and the average has to be recorded (note that tree is multitrunk in comments). Calliper 130cm protocol Measured at 1m from the ground with a graduated ribbon Ribbon 1m protocol Sex determination sex SEX Determination of the tree sex plant Leaf gas exchange was assessed with a portable infrared gas analyzer (LI-6400; LI-COR Inc., Lincoln, USA) equipped with a fluorometer (LI-6400-40, LI-COR Inc., Lincoln, USA). Light response curves were performed 5–11 h after photoperiod initiation, using fully expanded leaves of 71 days-old plants under good illumination. A 28°C block temperature was used, with CO2 concentration at 400 ppm and an air flow rate of 500 umol s−1. Photosynthetic photon flux density (PPFD) was gradually decreased from 2000 to 0 (2000; 1750; 1500; 1200; 900; 700; 500; 250; 100; 70; 50 and 0 µmol photon m−2 s−1). A 2–3 min acclimation period was performed between the measurements of the 12 light levels. Leaf gas exchange light response curve protocol leaf stomatal index Ratio between the number of stomata and the total number of epidermal cells counted on the same unit area SI Stomatal index NADH protocol Measurements based on the coupling of catalyzed oxidation reactions of the same compound, NADH. Growth scoring scale lamina shape BS Shape of the lamina Lamina shape Flexuosity protocol Visual assessment on the first 15 m of the tree height (the crown is not taken into account) with a reference scoring scale. In case of forked stems, only the trunk below the deepest forking point is evaluated. Observations should ideally be done in winter time as visibility is better without leaves. carbon-to-nitrogen ratio C/N C/N leaf Ratio of the mass of carbon to the mass of nitrogen in leaves. It can, amongst other things, be used in analysing sediments and compost. % Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Oleic acide cork suberin content Suberin Oleic content Suberin Oleic content leaf Alpha pinene content molecule content Alpha pinene content a.pinene survival Withered leaves leaf Assessment of the survival state of leaves WI BBCH_90 evaluation Assessment of the date when the first leaves of the crown have faded or fallen Assessment of the date when shoots reached 20% of their final size (deducted a posteriori) BBCH_32 evaluation Assessment of the date when 50% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_65 evaluation quality WC% Compression wood, reaction wood formed on the lower sides of branches and leaning trunks and characterized by darker color, glassy appearance, relatively wide and eccentric annual rings, shorter vascular elements, and excessive and uneven shrinkage cork Compression wood Chlorophyll a to b ratio Chlorophyll ratio protocol RACH Rachis quantity Assessment of rachis quantity, the main stem of a compound leaf bearing each leaflet of the blade quantity rachis The total amount of carbon fixed by the plant per unit time. Measured by determining the changes in CO2 concentration over a plant leaf in a glass enclosure. leaf Photosynthetic rate An photosynthetic rate Leaf water content Amount of water in leaves leaf LWC water content CIR circumference stem Circumference of the tree main stem Tree circumference electron transport ETR Transfer of electrons during photosynthesis in light saturated leaf leaf Leaf electron transport rate Health status red strip survival plant SUR Assessment of the health status related to red band disease plant LD Latency measured against a given rust strain Latent Period latency BBCH_95 evaluation Assessment of the date when 50% of the foliage turned color (color range depending) or fell het5 None Mf is the fresh mass, Mt is the turgid mass after rehydrating the leaves and Md is the dry mass after drying the leaves in an oven.  Leaf water content protocol Numerical unknown - 1 decimal plant PLAG geotropism Plagiotropy Observation of the tree growth orientation compared to the soil, imposed by gravity (geotropism). It is plagiotropic if the axis of growth is horizontal and orthotropic if the axis of growth is vertical. Adaxial epidermal cells leaf EP Assessment of the number of epidermal cells on the adaxial leaf area (upper surface of the leaf) epidermal cell LC color leaf Leaf color in autumn Leaf color cork age scoring scale Chemical content protocol Content measured by chemical analysis quantity DP double feet Double feet quantity Assessment of double feet quantity sequential branch sequential branch SeqBC Assessment of sequential branches quantity, shoots produced throughout tree development within a short time period after the bearer growth unit has formed Sequential branches quantity Assessment of the date when 20% of the foliage turned color (color range depending) or fell BBCH_92 evaluation Heterozygosity Assessment of the heterozygosity in the population Heterozygosity heterozygosity population BBCH_19 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 90% of the crown. For pines: 90% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 90% of buds with open-brushed needles. The leaves were sampled after 50 days of water-logging Leaf mass/area protocol Image acquisition of the two radial, two transversal and one tangential sections was made through scanning at a minimum resolution of 300 dpi. Images were uploaded and then analysed using ImageProPlus1(Media Cybernetics, USA) image-processing software. Cork Porosity protocol plant NCI Competition index competition index Assessment of the competition situation at the tree level Flatness uniformity of the inner plank surface cork Inner plank surface relief relief BR BBCH_18 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 80% of the crown. For pines: 80% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 80% of buds with open-brushed needles. quantity Epis Epicormic quantity Assessment of epicormics quantity. These formations are appearing on trunks or master branches surfaces of living trees, resulting from buds repelled by cambial growth at the periphery on the trunk. epicormic Debarking scoring scale quality QUAL cork Evaluated by the homogeneity of the cork, aspecto da barriga and aspecto das costas which are an association of different features. Varies between 1st to 6th and refugo where 1st is the best, 6th the worst and refugo even worst. Cork quality BBCH_98 evaluation Assessment of the date when 80% of the foliage turned color (color range depending) or fell The minimum value of a list of measured or computed values Minimal value Hypertrophied lenticels quantity THL Assessment of hypertrophied lenticels quantity, a loose aggregation of cells which penetrates the surface of a woody plant and through which gases are exchanged between the atmosphere and the underlying tissues lenticel quantity BBCH_73 evaluation Assessment of the date when 30% of the fruits reached their usual maximum size, but did not changed color yet porosity Assessment of the porosity (or empty spaces) in cork. It is a fraction of the volume of pores over the total volume, so between 0 and 1 or as a percentage. cork %Pores Cork Porosity leaf Dissolved oxygen content oxygen content Dissolved oxygen content in leaves DOC BBCH_82 evaluation Assessment of the date when 20% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) mg/g Leaf surface protocol None Plant defects Assessment of the plant defects defects DEF plant pubescence Lamina pubescence lamina HR Assessment of the lamina pubescence, the fact of having fine hairs more or less spaced on the leaf blade Minimal meteo value The minimum value of a list of measured meteo values Hydroxyphenylaldehyde/Syringaldehyde/Coniferaldehyde contents Ratio between Hydroxyphenyl (H) Syringyl (S) and Guaiacyl (G) contents molecule content H/S/G wood Plant height protocol Measured from soil to basis of the apical meristem or bud (depending of time in season) with a pole or a clinometer plant Assessment of the tree condition in the face of a chalara attack, a disease in ash trees characterised by leaf loss and crown dieback and caused by the fungus Chalara fraxinea chalara Chalara CHAL Cork defects - Radial section protocol Defects are quantified in the two radial surfaces of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to radial surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas are measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects were measured separately: cork porosity and nail inclusions. Calculation of the medium of a series of measured or computed values Medium value Aspect protocol The aspect/direction (azimuth) is measured by compass (5 degree steps) in the direction of the steepest slope leaf Carboxylation efficiency carboxylation efficiency An/Ci The initial slope provides an in vivo measure of the activity of Rubisco in the leaf. This is sometimes called the mesophyll conductance. soil slope Individual slope Slope angle at the location of the tree slope Assessment of the sequential branches volume Sequential branches volume quantity sequential branch vSeqBC Percentage venation Percentage venation venation PV leaf mass/area leaf Leaf mass per leaf area LMA Leaf mass per leaf area BBCH_17 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 70% of the crown. For pines: 70% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 70% of buds with open-brushed needles. Assessment of epicormic buds quantity, a dormant/latent bud having reached the bark as its growth has been delayed for a rather long time quantity epicormic bud Epicormic bud quantity LBD Assessed by the average of 5 random measurements of bark thickness à 130 cm. Bark thickness mean Suberin Enedioic content suberin content Suberin Enedioic content cork Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Enedioic acid Obversity protocol None Primary bud quantity quantity primary bud PriBD Assessment of primary buds quantity. The primary bud is the first to grow after the winter dormant period and is the most likely to develop a robust shoot during the growing season. cm leaf Water use efficiency Water use efficiency, the ratio of water used in plant metabolism to water lost by the plant through transpiration Wi water use BBCH_30 evaluation Assessment of the date when shoots start to growth Tolerance protocol Coefficient calculated for each untreated plant by comparing the values of a growth (HT, CIR or Vol) with the average values of the same for plants of the same genotype in treated situation Additional feet NBPIEDSUP quantity Assessment of additional feet quantity for the same tree since last passage foot Assessment of petiols without leaves petiol PETIOL leaf Petiols without leaves Canopy projection canopy_projection Length of the maximum extension of canopy branches from one end to the other (crown diameter) crown diameter Diameter of the main stem measured at or within a specified distance from the collar, the part making the transition between the top of the root system and the base of the aerial part. Collar diameter protocol Wood vessel protocol None g/m2 BBCH_70 evaluation Assessment of the date when the first fruits reached their usual maximum size, but did not changed color yet Pilodyn protocol Measured with a pilodyn with 3 repetitions Assessment of the date when the majority of the flower buds began to swell BBCH_51 evaluation dm sympodic Sympodial growth Assessment of sympodic growth. The apparent main axis is not developed from a terminal bud but transferred to a lateral meristem made up of successive secondary axes each of which represents one fork of a dichotomy, the other being of weaker growth or suppressed entirely. sympodic plant Visual count Visual count preguentas/madeirentas cork preguentas/madeirentas Continuity and felicity persistence are two characteristics of the periderm of cork oak that allow the sustained exploitation of cork. However, in some cork oaks sometimes appear in the secondary phloem small peridermal arcs enveloping the sclerites or the outermost blades of the broad phloem rays, and whose new felide ends up joining the anterior path of the felogene. These sclerenchymal formations, isolated from the intercarcass by a normal process of abcision, become sclerenchymal inclusions in the suberous tissue or the felogene surface. These corks have, for these reasons, great hardness, low elasticity and high density quality Survival state scoring scale Capillary electrophoresis Quantification by capillary electrophoresis Budflush scoring scale sur 8 Volume of hardwood, the wooded part of a tree (trunk and branches) with a diameter at the smallest end greater than 7 cm (most often corresponding to the maximum cutting of wood made by forest operators) volume Volume Vol Measured with spectrophotometer Beckman DU 640 and reported to leaf area Computation per leaf area cork Pores Frequency pore frequency Number of pores in frame area Pores frequency Unknown Cork ring width protocol None Fructification BBCH scoring scale Shoot diameter protocol Measured below the terminal bud Assessment of epicormic branches quantity, shoots growing from a dormant bud lying underneath the bark of an old structure quantity EpiBC Epicormic branches quantity epicormic branch Measured with spectrophotometer Beckman DU 640 and reported to leaf dry mass Computation per leaf dry mass Growing lenticel cells cells alongating/expanding Assessment of the of lenticel cells alongating and expanding cork N-A&E_lent Unknown Unknown cm2 Measured with a pole graduated in centimeters Pole protocol FLO Blossoming flower blossoming Assessment of the blossoming (male and/or female) level Suberin chemical content protocol Content in suberin measured by chemical analysis Leaf relative water content was determine at maximum stress (day 28) and at the end of the experiment (day 35). Six leaf discs (Ø = 19 mm) were collected for each plant from the three youngest expanded leaves (2 discs per leaf). Five plants were analysed per treatment. Leaf relative water content protocol Temperature on the site of the population temperature Temperature population Temp Visual assessment Visual assessment None Computation Sex scoring scale Xylem hydraulic conductivity Xylem hydraulic conductivity KS hydraulic conductivity xylem Chemical composition in polyphenols Phenols_CC cork Polyphenols composition polyphenols BBCH_63 evaluation Assessment of the date when 30% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. AIG needle Needles coloration color Assessment of the Larch needles coloration basal curve Basal sweep stem CB Assessment of the basal curve leaf nitrogen content Leaf nitrogen content LNC Nitrogen content in leaves vEpiBC volume Assessment of the volume of epicormic branches Epicormic branches volume epicormic branche Blossoming scoring scale Assessment of the date when 40% of the fruits reached their usual maximum size, but did not changed color yet BBCH_74 evaluation leaf Leaf protein content Protein content in leaves TPC protein content population Rainfall Rainfall on the site of the population Prec precipitation None Cork age protocol plant DF Assessment of the tree defoliation defoliation Defoliation Leaf chlorophyll content protocol Chlorophyll content was measured twice a week from 6 days before water-logging to 47 days of treatment. Measurements were made on 3 fully developed leaves of the last growth flush before water-logging on each tree, using a chlorophyll content meter (CCM, Opti Science, Tyngsboro, USA). Number of mature fruits/cones that you are able to count on the tree in 30 seconds from the ground using binoculars Fruits/Cones protocol Fruits/Cones mean Assessed by the average of 3 rounds of counting of fruits/cones Suberin Hydroxyoctadecanoid content cork suberin content Suberin Hydroxyoctadecanoid content Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Hydroxyoctadecanoid acid Assessment of the date when 70% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_67 evaluation chalara leaf Assessment of the influence of chalara on the leaves number CHAL_nbF Chalara influence on leaves Ramicorn quantity RA quantity ramicorn Assessment of the ramicorn quantity DES plant Assessment of the drying up level of the stem Stem drying up drying up flush NF Assessment of flushes during the growing season Flush plant height Height increment plant IH Height increase by the growth of the tree main stem thinning ECL Assessment of the thinning, an operation to remove a number of trees from a plot in favour of those left in place Thinning plant aSeqBC inclination Mean inclination angle per log of the sequential branches Sequential branches angle branch Senescence scoring scale BBCH_61 evaluation Assessment of the date when 10% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. Status scoring scale Water content (WC) measurements were performed according to Levitt, 1980. FW: Fresh weight of plant material was determined at the end of the experiment (day 35). DW: Dry weight (g) was determined after drying plant material at 70°C (until a constant weight was achieved). Water content protocol Assimilation rate A Assimilation rate leaf assimilation length Stem length Stem length stem Stem_L Maximal value The maximum value of a list of measured or computed values observation Observations on the tree, unsystematic and somewhat anecdotal plant COM Comments SUR Survival survival plant Assessment of the survival state of the tree NBBRM master branche quantity Master branches quantity Assessment of the quantity of branches of diameter approximately equal or greater than the trunk diameter Forking score FO_score plant forks position Assessment of forks position on the tree Cork chemical composition in suberin monomers (Glycerol and phenolics): Glycerol Suberin Glycerol content suberin content cork Suberin Glycerol content cork Chemical composition in polysacharide polyphenols Polysacharide composition Sacharides_CC BBCH_76 evaluation Assessment of the date when 60% of the fruits reached their usual maximum size, but did not changed color yet Budflush scoring protocol Visual assessment on the terminal bud or on the whole tree when terminal bud is not visible with a reference scoring scale Number Expert visual assessment for cork belly color Cork plank color protocol lobe Lobe width LW width Lobe width Circumference increment Circumference increase by the growth of the tree main stem circumference stem ICIR radial parenchyma thickness Wood radial parenchyma thickness WRP-t Wood radial parenchyma thickness Budflush conifers apical bud scoring scale plant branch BRA Assessment of the tree branches density Branching density growth Assessment of the stop of shoots growth Growth stop AC shoot secondary epicormic bud Assessment of epicormic secondary buds quantity, a secondary bud having reached the bark as its growth has been delayed for a rather long time Epicormic secondary bud quantity quantity SecLBD mmol H2O m-2 s-1 enzymatic activity GO leaf Enzymatic activity of glycolate oxydase Enzymatic activity of glycolate oxydase Calculation of the mean of the 5 maximal values measured or computed Maximal mean value Hypertophied lenticels scoring scale a.copaene molecule content Alpha copaene content leaf Alpha copaene content discontinuities enguy Sharp furrows, oriented longitudinally on the coast of the planks, and may cause discontinuities in the first layers of cork that were produced cork Cork discontinuities Cork annual growth Annual increment of cork rings thickness growth Cork AG cork Assessment of the date when 90% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) BBCH_89 evaluation Carotenoid content in leaves CAR leaf carotenoide content Leaf carotenoid content bud break bud BF_prec Budflush precocity Coefficient of the budflush precocity Fructification scoring scale Lamina length LL Lamina length lamina length BBCH_33 evaluation Assessment of the date when shoots reached 30% of their final size (deducted a posteriori) Chlorophyll a Chl a Chlorophyll a content in leaf green tissue leaf chlorophyll content None Pore roundness protocol m Chlorophyll measurement: Absorbance was measured with a spectrophotometer (DU-70 Spectrophotometer, Beckman, USA) at 663.2 and 646.8 nm in a quartz cuvette. A646.8 is the absorbance at 646.8 nm and A663.2 is the absorbance at 663.2 nm, v is volume (ml), DW is dry weight. Chlorophyll protocol Cork plank uniformity protocol Weight of the dry root Root dry mass RDM biomass root Repetitions protocol Number of replicates used to calculate the mean value of the associated trait Measured using a hammer and a sharp stick/pike (usually used for concrete), till 60 cm whenever possible, in a randomly chosen spot within the 10x10 m virtual plot around the tree. Make sure that you do not confuse a medium sized rock with the bedrock. Spike protocol To boil the cork, the 30×30 cm samples are submerged in water at approximately 90°C for 1 h. During the drying period of 72 h cork is kept protected from direct light. The marked positions are then measured for comparison with data obtained before boiling. Cork thickness after boiling protocol Drought damage plant damages Assessment of drought damages SEC RQ Leaf rubisco content Rubisco content in leaves leaf rubisco content Competition Appreciation of the space available for the tree to grow competition COMP plant mm2 Crown scoring scale Wood fiber protocol None Leaf area counting protocol Counted on a fixed leaf area of 0.182 mm² deviation verticality Measurement of the deviation from the verticality Deviation from verticality plant VER Visual assessment with a reference scoring scale for cork industrial quality Cork industrial quality protocols Total height of the tree, from the ground to the tallest part of the crown HT height plant Tree height µmol.m-2.s-1 Basal sweep protocol Visual assessment with a reference scoring scale Petiol ratio protocol None Wood fibers lengh wood Wood fibers lengh WF-l fiber lengh Sylleptic shoot protocol Number of sylleptic branches more than 10 cm-long are counted at the end of the growing season Cork defects - Transversal section protocol Defects are quantified in the two transversal of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to transversal surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas were measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects were measured separately: cork porosity and nail inclusions. Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves of the crown are spread. For pines: first buds very elongated with the first needles coming out of the sheath the sheath glued in pairs. For other conifers: first buds showing open-brushed needles. BBCH_10 evaluation Blossoming BBCH scoring scale The maximum value of a list of measured meteo values Maximal meteo value Lobe width ratio LWR lobe Lobe width ratio lamina Number/area Average meteo value The mean value of a list of measured meteo values BBCH_94 evaluation Assessment of the date when 40% of the foliage turned color (color range depending) or fell canker Assessment of canker quantity quantity Canker quantity Canker FRUC_REG Fructification regularity plant Regularity of the fructification fructification 3Carene leaf 3 carene content 3 carene content molecule content PriLBD Epicormic primary bud quantity quantity Assessment of epicormic primary buds quantity, a primary having reached the bark as its growth has been delayed for a rather long time primary epicormic bud Counting manualy the number of leaves longer than 2 cm on the plant Leaf counting protocol CCM (arbitrary units of chlorophyll content meter) Observation made by X-Ray X-Ray protocol Abundance in crown scoring scale Wood density protocol Wood density at 12% moisture content Ratio leaf stomatal density STOM Stomatal density Assessment of the number of stomata, the stomata controling the movement of gases in and out of a leaf, making carbon dioxide available for photosynthesis and controlling the loss of water from the leaf through transpiration Day Assessment of the date when 80% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) BBCH_88 evaluation H Wood Hydrogen hydrogen content Hydrogen content in wood wood Shoot dry mass dry mass shoot SHDM Shoot dry mass Assessment of the date when budflush score will be reached for the first time Budflush date break BF_date bud Assessment of the number of lenticel cells dividing cork N-div_lent cell dividing Dividing lenticel cells g SecBD quantity Assessment of secondary buds quantity. The secondary bud is present next to the primary bud within the compound bud and it is dormant until it is needed by the plant as a back up when the primary bud fails. secondary bud Secondary bud quantity Regularity scoring scale Leaf area was determined with a color image analysis system (WinDIAS 2, Delta-T Devices, Cambridge, UK) by scaning individual leaves Leaf area protocol Collar protocol Measurement made at the base of the tree, at the collar BBCH_45 evaluation Assessment of the date when at least 50% of buds have a juvenile coloration wood Wood fibers thickness fiber thickness Wood fibers thickness WF-t Assessment of the date when at least 10% of buds have the tips of the first leaves that extend beyond the tip of the bud scales BBCH_08 evaluation Forking score protocol Visual assessment with a reference scoring scale Height of the branch height Branch height branch HB None Wood width protocol Regeneration scoring scale plant Elevation above sea level of the tree level Individual elevation elevation elevation saccharose content leaf Leaf saccharose content SACL Saccharose content in leaves Phenotypic note SEL plant selection Assessment of the phenotypic value of the tree for selection Assessment of the date when 30% of the foliage turned color (color range depending) or fell BBCH_93 evaluation Calculation of the difference between 2 measured values of the same morphological observation (ex: circunference, height) at different times to evaluate the tree growth Increase protocol BBCH_84 evaluation Assessment of the date when 40% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Assessment of the polycyclism nature, the ability for a plant to produce several flushes in the same growing season polycyclism Polycyclism nature POLY plant carboxylation efficiency Instantaneous carboxylation efficiency Inst_Carbon_eff Instantaneous carboxylation efficiency leaf Cover scoring scale µmol electron m-2 s-1 leaf Leaf area area Total area of the leaf LA ring Intra-ring variance varintracerne Intra-ring variance wood Budset date bud budset Assessment of the date when budset score will be reached for the first time BS_date Cork defects percent - Transversal section protocol Defects are quantified in the two transversal of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to transversal surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas were measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects (cork porosity and nail inclusions) were measured separately and the defect areas were expressed as a percentage of the total area of cork under analysis. Assessment of the date when at least 50% of the buds have the tips of the first leaves that extend beyond the tip of the scales, which may still be present. The leaves begin to individualize. In pines, the needles begin to pierce the sheath. In other conifers the first buds show individualized needles in closed brush. BBCH_09 evaluation Suberin Tyramine content Cork chemical composition in suberin monomers (Glycerol and phenolics): Tyramine cork suberin content Suberin Tyramine content LP Leaf perimeter Leaf perimeter perimeter leaf tolerance plant Rust tolerance coefficient measured by comparing the growing values (CIR, HT, Vol) on treated and untreated plants Tol Tolerance Image acquisition of the two radial, two transversal and one tangential sections made through scanning at a minimum resolution of 300 dpi. Images uploaded and then analysed using ImageProPlus1 (Media Cybernetics, USA) image-processing software. Pore frequency protocol Presence/Absence cellulose content Cork chemical composition in cellulose Cellulose wood composition wood WCC soil Abundance of natural regeneration around the tree Natural regeneration regeneration regeneration cork The woodpecker (Dendrocopus minor) that in pursuit of the larvae of the cobrilha also perforates often the planks. Woodpecker status Woodpecker quality Forking scoring scale on 5 WAP-t Wood axial parenchyma thickness axial parenchyma thickness Wood axial parenchyma thickness molecule content Germacrene content leaf germacrene Germacrene content Budset bud Assessment of the budset level budset BS_score Percentage venation protocol None None Cork discontinuities protocol X-Ray counting protocol Counting made with X-Ray Competition scoring scale shoot Shoot growth Assessment of shoots growth DEV growth Cork plank thickness Cork plant thickness thickness ESP cork NV Intercalary veins quantity quantity Assessment of the quantity of leaf intercalary veins leaf vein Harvest plant REC sampling Sample(s) collected on the tree TE Terminal bud status Assessment of the survival state of the terminal bud, the bud at the tip of the stem bud survival BBCH_62 evaluation Assessment of the date when 20% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. Branching habit BRAH Branching habit branch leaf Sabinene content sabinene molecule content Sabinene content molecule content Terpinolene content leaf Terpinolene content Terpinolene Ratio leaf nitrogen to leaf carbon nitrogen/carbon leaf Ratio leaf nitrogen to leaf carbon LN/LC PhiPS2 leaf photosystem II Quantum yield of electron transfer at PSII Leaf quantum yield of photosystem II Assessment of the date when 10% of the fruits reached their usual maximum size, but did not changed color yet BBCH_71 evaluation HTrunk Height of trunk below the first branches of the canopy stem Height trunk height Minimal mean value Calculation of the mean of the 5 minimal values measured or computed Chalara scoring scale on 3 Assessment of the diameter of the branch branch Branch diameter diameter DB Detailed survival scoring scale Abundance scoring scale Feet quantity NBPIED foot quantity Assessment of the feet quantity on the tree wood Hemicellulose wood composition Hemicellulose wood composition WHC hemicellulose content Survival scoring scale 2 Amount of water in the stem water content stem Stem water content SWC mol.m-2.s-1 Assessment of the quantity of lobes on the lamina Lobe quantity NL lobe quantity plant Distance individual/neighbor neighbor distance Distance between the sampled tree and its closest neighbors distance leaf Beta caryophyllene content Beta caryophyllene content molecule content b.caryophyllene Colorimetric protocol Colorimetric determination CNL protocol Notation of the date in cumulative night lentgh after July 1st that the observed score is reached for the first time Measured on a fixed leaf area of 0.182 mm² Leaf area measurement protocol Total cork chemical composition in suberin monomores Total suberin content suberin content Total suberin content cork branch diameter Shoot diameter increase IRD Shoot diameter increase leaf specific area SLA Specific leaf area Leaf area per unit of leaf dry mass Limonene content molecule content Limonene content Limonene leaf BBCH_79 evaluation Assessment of the date when 90% of the fruits reached their usual maximum size, but did not changed color yet Assessment of rust, a plant disease caused by pathogenic fungi of the order Pucciniales (previously also known as Uredinales) rust plant ROU Rust plant BioF Foliar biomass Foliar biomass, the mass of biodegradable living matter of the crown foliar biomass Wood infradensity protocol None variable_of Cork defects percent - Tangential section protocol Defects are quantified in the two tangential of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to Tangential surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas were measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects (cork porosity and nail inclusions) were measured separately and the defect areas were expressed as a percentage of the total area of cork under analysis. Estimated in the 10x10 m virtual plot around the tree with a predefined scoring scale Virtual plot protocol radial parenchyma high Wood radial parenchyma high WRP-h Wood radial parenchyma high Forking index plant Combination of the forking position and the number of forks, the highest index being for non-forking trees and for trees with a lower number of forks at a higher position forking index FO_index protein content Leaf soluble protein content SPC leaf Soluble protein content in leaves Survival scoring scale Flexuosity scoring scale on 5 Alpha cubebene content Alpha cubebene content a.cubebene leaf molecule content Sinus width width SW sinus Width of the leaf sinus, the space or indentation between two lobes or teeth of a leaf Numerical unknown Tree flexuosity flexuosity FLX plant Assessment of the flexuosity of the tree BF Latewood density Assessment of latewood density, the harder and less porous portion of an annual ring of wood that develops late in the growing season latewood wood Assessment of the date when at least 50% of the foliar or mixed buds have burst. The green tips or bases of the leaves appear between the scales. In pines, the bud lengthens and the needles remain inside their sheath, which takes on a silvery hue; the green base of the needles can be seen. In other conifers, the needles begin to be visible. BBCH_07 evaluation Quenching protocol None Year Stable isotope analysis None BBCH_11 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 10% of the crown. For pines: 10% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 10% of buds with open-brushed needles. Uredinia Size scoring scale Secateur knocks number plant pruning NBS Number of secateur knocks when shaping Half-day Petiole ratio petiol PR Petiole ratio Comsumed leaf protocol Measurement of consumed leaf disk area (image analysis) based on feeding multiple choice bioassay in laboratory conditions (boxes of 48 genotypes x 20 replicates). Ratio between Syringyl (S) and Guaiacyl (G) contents S/G wood Syringaldehyde/Coniferaldehyde contents molecule content None None azimuth azimuth The direction (azimuth) that the slope faces at the location of the tree soil Individual aspect crown Crown dieback dieback Assessment of crown dieback, a condition in woody plants in which peripheral parts of the crown are killed DC Harvest protocol Visual assessment collection Broadleaves budflush scoring scale Reference whorl Year of appearance of the reference verticula appearance branch ANVERE BarkT thickness Asessment of the thickness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark Bark thickness bark Rust scoring scale Polycyclism scoring scale gW Stomatal conductance, the rate of passage of water vapor exiting through the stomata of a leaf leaf stomatal conductance Stomatal conductance to water vapour Calliper protocol Measured with a calliper graduated in millimeters None Computation per gram of protein BBCH_15 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 50% of the crown. For pines: 50% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 50% of buds with open-brushed needles. vulnerability curve Slope of the vulnerability curve S50 Slope of the vulnerability curve slope Eelness scoring score cover Estimatation of the amount of vegetation or rock cover on the ground around the tree soil cover Vegetation/Rock cover Epinasty EPI epinasty leaf Assessment of epinasty, a nastic movement in which a plant part (such as a leaf) is bent outward and often downward Soil water availability Soil was spread in a fine layer and air-dried in the glasshouse until a constant weight was achieved. Minimum pot weight was considered to be pot’s weight containing a totally dry soil mixture. Maximum pot weight was measured when soil was at field capacity (FC) armillaria Armillaria plant Assessment of armillaria (parasitic fungi) at the base of the tree ARM BBCH_78 evaluation Assessment of the date when 80% of the fruits reached their usual maximum size, but did not changed color yet Leaf staining ST leaf staining Leaf staining Defects scoring scale Soil stone content Stone content in the soil around the tree stone_content stone content soil µm Assessment of the shape of the tree FOR shape plant Tree shape cell lygnifying Assessment of the number of lenticel cells lygnifying N-Lygn_lent cork Lygnifying lenticel cells Assessment of the date when at least 10% of the bud burst. Leaves appear between the scales. In pines, the bud lengthens and the needles remain inside their sheath which takes a silver tint; we see the green base of the needles. In other conifers, the needles begin to be visible. BBCH_06 evaluation GS Enzymatic activity of Glutamine leaf Enzymatic activity of Glutamine enzymatic activity leaf Chlorophyll b content in leaf green tissue Chl b Chlorophyll b chlorophyll content number uredinia UN Assessment of uredinia, a reddish pustule that occurs on the leaves of a plant infected with rust fungus Uredinia Number Beta pinene content b.pinene leaf Beta pinene content molecule content Wood vessels diameter wood vessel Wood vessels diameter diameter WV-d Branching habit scoring scale BBCH_66 evaluation Assessment of the date when 60% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. Identifier Assessment of the date when 80% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_68 evaluation µmol CO2 / mmol H2O width Largest width of the lamina Lamina largest width WP lamina Forking scoring scale on 4 The occurrence of leaf epinasty was recorded using three ordinals classes: above perpendicular, perpendicular to stem axis and less then perpendicular, and three numerical values were assigned for these classes: 120°, 90° and 60° Epinasty protocol Degree WID wood Wood infradensity infradensity Wood density, or the dry weight per unit volume of wood Crown size protocol Assessed by the average of 2 perpendicular diameter measurements across the crown, with the first measurement made along the longest axis of the crown from one edge to the opposite edge. cell wall thickness wood vessel Wood vessels cell wall thickness Wood vessels cell wall thickness WV-CW-t CM leaf carbon content Carbon content in leaves Leaf carbon content thickness Measure of the Caliber in linhas (1 linha = 2,256 mm). The cork plank can be divided in 2 major classes regarding the thickness: Delgada (thin) (6 to 8 linhas or 14 to 27 mm) and Rolhável (stoperble) (12 to > 18 linhas or 27 to > 40 mm). Caliber Cal cork Chalara scoring scale on 5 Girdling index NID quantity nest Assessment of the quantity of nests on the tree Nests quantity suberin content Cork chemical composition in suberin monomers (Glycerol and phenolics): Ferulic acid Suberin Ferulic content cork Suberin Ferulic content Lobe depth ratio lobe LDR depth Lobe depth ratio Senescence senescence plant SEN Assessment of the senescence, the growth phase in a plant or plant part (such as a leaf) from full maturity to death Ratio of the leaf area, measured by image analysis, per the leaf dried mass (cm2/g) SLA protocol Branching scoring scale on 5 Tension wood quality cork Tension wood, reaction wood formed on the upper side of tree branches and leaning trunks and characterized by narrower and thinner walled wood and fiber elements, excessive longitudinal shrinkage, and tendency to collapse on drying WT% ring width TRW wood Tree ring width Growth rings, also referred to as tree rings or annual rings, can be seen in a horizontal cross section cut through the trunk of a tree Gamma cadidene content leaf g.cadidene Gamma cadidene content molecule content Pollarding scoring scale Degree celsius mg/L Chemical content ratio protocol Content ratio measured by chemical analysis Pore lenght protocol None Sulcos pronunciados, orientados longitudinalmente na costa das dapranchas, podendo causar descontinuidades nas primeiras camadas de cortiça que foram produzidas cork eels Cork Eelness BC Color of the cork plank which adderes to the tree trunk color Inner plank surface color cork flush length MFL Flush length Mean flush length during the growing season leaf Branches angle scoring scale on 4 cork suberin content Suberin Ectadecanedioid content Suberin Ectadecanedioid content Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Ectadecanedioid acid leaf a.humulene Alpha humulene content molecule content Alpha humulene content cork suberin content Suberin Alkanols content Suberin Alkanols content Cork chemical composition in suberin monomores (long-chain mono-functional monomers): Alkanols Day number protocol Notation of the number of days until the observed stage is reached for the first time Precocity scoring scale BBCH_97 evaluation Assessment of the date when 70% of the foliage turned color (color range depending) or fell BBCH_69 evaluation Assessment of the date when 90% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. None Lenticels protocol Stem length protocol Measured from soil to basis of the apical meristem or bud (depending of time in season) Visual assessment with the BBCH reference scoring scale Visual scoring BBCH None Epicormic percentage protocol Delta13C carbon discrimination Carbon isotope (C13) composition in leaves leaf Delta C13 Assessment of the date when at least 50% of buds are lignified and mature BBCH_49 evaluation BBCH_16 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 60% of the crown. For pines: 60% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 60% of buds with open-brushed needles. BBCH_39 evaluation Assessment of the date when shoots reached 90% of their final size (deducted a posteriori) Debarking protocol None Assessment of the date when 70% of the fruits reached their usual maximum size, but did not changed color yet BBCH_77 evaluation Index Allelic richness scoring scale Penetration opposition stem PIL Assessment of wood hardness by testing its resistance to pilodyn penetration pilodyn Slenderness protocol The slenderness of a tree is calculated by dividing its total height by its diameter at 1.30 m. Note that both values must be measured with the same unit. Delta cadidene content molecule content Delta cadidene content leaf d.cadidene BBCH_99 evaluation Assessment of the date when 90% of the foliage turned color (color range depending) or fell LV Assessment of the quantity of leaves on the tree Leaf quantity quantity leaf Marcescence scoring scale on 6 Fork height protocol Observation of the fork presence or absence. If the fork is gone and not transformed into a large branch, the value will be 0. If the fork is gone but transformed into a large branch, the value will be 1. If the fork is still present, its height from tree collar must be measured and the value will be the fork height. ANFO fork Forking Notation of the fork appearance stem Calculation of the cumulative value of a series of measured or computed values Cumulative value BBCH_01 evaluation Assessment of the date when most leaf or mixed buds began to swell Branches angle protocol 2 Visual assessment with a reference scoring scale g/100g Identification identification ID plant Identification of the targeted tree (mother tree, replenish …) or the sample collected on the tree Selection scoring scale molecule content camphene Camphene content leaf Camphene content leaf quenching NPQ Non-photochemical quenching Non-photochemical quenching Wood density WD Wood density, or the dry weight per unit volume of wood wood density Relative cover protocol Plant and rock covers are assessed relatively to each other (as if seen from above) in the 10x10 m virtual plot around the tree and with a predefined scoring scale. As the estimations are relatives, the total of the two must be 100%. linha BBCH_81 evaluation Assessment of the date when 10% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Net photosynthesis net_An Net photosynthesis Weight of the dry leaf Leaf dry mass leaf LDM biomass SDM Weight of the dry stem biomass Stem dry mass stem B wood ring Ring density Assessment of ring density, the layer of wood produced by a single years growth of a woody plant Assessment of the date when shoots reached 10% of their final size (deducted a posteriori) BBCH_31 evaluation Assessment of the date when 40% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_64 evaluation Canker girdling index protocol Visual appreciation at the inoculation point with a reference scoring scale. Most protocol are using 2 or 3 inoculation points per tree. Cobrilha status Cobrilha The larva of the coriander (Coroebus undatus) that digs galleries in the nest near the felogene cork quality shoot Shoot length length Total length of the shoot LPOUS Cork defects percent - Radial section protocol Defects are quantified in the two radial surfaces of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to radial surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas are measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects (cork porosity and nail inclusions) were measured separately and the defect areas were expressed as a percentage of the total area of cork under analysis. BBCH_00 evaluation Assessment of the date when all buds are dormants PhiPS2 protocol Leaf gas exchange was assessed with a portable infrared gas analyzer (LI-6400; LI-COR Inc., Lincoln, USA) equipped with a fluorometer (LI-6400-40, LI-COR Inc., Lincoln, USA). Data was periodically collected from the youngest fully expanded leaf (5–9 h after photoperiod initiation), never extending a total period of 90 min. Block temperature was set at 28 ◦C, light intensity was set at 300 µmol photons m−2 s−1 and CO2 concentration was kept at 400 ppm with an air flow rate of 500 µmol s−1. Fs and Fm’ represent the steady state and maximum fluorescence measured under light adapted conditions. Biomass protocol Measured by leaves weighing Assessment of the growth of the tree Tree growth GR plant growth Size of uredinia, a reddish pustule that occurs on the leaves of a plant infected with rust fungus US uredinia Uredinia Size size Calculation of the mean ring, latewood or earlywood density weighted by the ring surface Mean wood density cm3 Calendar year diameter Shoot diameter branch Shoot diameter RD Calculation of the variance of a series of measured or computed values Variance kg/m3 Assessment of the date when the majority of floral buds have emerged from the buds but are closed. For flowers with petals: the majority of flower buds have emerged from the buds and are still closed, but the colour of the petals is visible. For male flowers in catkins: the catkins are at the end of lengthening, the scales begin to move apart. For other flowers: stamens begin to be visible. BBCH_55 evaluation Assessment of the date when 50% of the fruits reached their usual maximum size, but did not changed color yet BBCH_75 evaluation sylleptic shoot Syllep quantity Sylleptic shoots quantity Assessment of the sylleptic branches quantity, a shoot that develops from a lateral bud with any period of dormancy on the main shoot Thinning scoring scale lesion stem Canker_LL Lesion length (longitudinal extent) of a canker lesion, an area of dead tissue which grow slowly and is caused by bacteria or fungus Canker lesion length Marcescence scoring scale on 3 Bark roughness scoring scale cork nail inclusions Nail inclusions Prego Area of the nail inclusions Assessment of the date when shoots reached 40% of their final size (deducted a posteriori) BBCH_34 evaluation Assessment of the date when 60% of the foliage turned color (color range depending) or fell BBCH_96 evaluation Ring width protocol None Needles coloration scoring scale µmol CO2 m-2 s-1 ETR protocol Standard method for gas exchange and fluorescence measurements. PPFD is the photon flux density of photosynthetically active radiation (400–700 nm), 0.84 is the assumed light absorbance of the sample, and 0.5 is the fraction of excitation energy diverted to the photosystem II Assessment of game damages GIB Game damage stem damages cork Area of the circular discontinuities of the cork plank Pores area pore area Pores Area Delta15N nitrogen discrimination Nitrogen isotope (N15) composition in leaves leaf Delta 15N Slenderness Slenderness of the tree, calculated by dividing its total height by its diameter slenderness C_El plant Xylem pressure presure xylem P50 Xylem pressure nkat/mg Suberin Hydroxyalkanoic content suberin content cork Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Hydroxyalkanoic acid Suberin Hydroxyalkanoic content Drying up scoring scale Ribbon 130cm protocol Measured at 130cm from the ground (approximately breast height) with a graduated ribbon BBCH_83 evaluation Assessment of the date when 30% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) water content Amount of water in roots RWC Root water content root Assessment of the date when most leaf or mixed buds have finished swelling and are ready to burst. For some species, the scales may have changed color. BBCH_03 evaluation pore lenght cork Pores Length Lenght of the circular discontinuities of the cork plank Pore lenght Budset scoring scale Canopy projection protocol Measured on the maximum extension of canopy branches along an axis of the crown, from one edge to the opposite edge Shoot/Root dry weight protocol Roots were cleaned with tap water and adventitious roots were counted, sampled and their length measured. Dry mass was measured on fine, main and adventitious roots, separately, and on leaves and stems. Dry weight was determined after drying plant material at 70°C (until a constant weight was achieved). Duration in half-day scale between date of inoculation and first sporulating uredia. Latent period protocol Wood Carbon content Carbon content in wood C wood carbon content BBCH_40 evaluation Assessment of the date when at least 10% of the shoots show signs of growth arrest (appearance of morphological markers) Forking index protocol Combination of the forking position and the number of forks Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 30% of the crown. For pines: 30% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 30% of buds with open-brushed needles. BBCH_13 evaluation break BF_score bud Assessment of the bud break level Budflush Drought damages scoring scale Leaf pigments content pigment content leaf Pigments content in leaves TPgC pore roundness Pores Roundness cork Pores roundness Circular discontinuities will have roundness about 1. When the pore is less circular the roundness value will be higher. consumed area Chrysomela leaf consumed area leaf Chrysomela Leaf area consumed by chrysomela (phytophagous insect) vpm [C02] Budset protocol Visual assessment of the status of terminal apex with a reference scoring scale Mean value Calculation of the mean of a series of measured or computed values LS leaf Leaf surface surface Leaf surface Lenticel cell with secondary wall deposition Assessment of the number of lenticels cells with secondary wall deposition N-2W_lent cork cell with secondary wall deposition straightening Assessment of straightened branch branch BRR Straightened branch ACC Annual increase increase Annual increase Budflush scoring scale on 3 Branch angle Assessment of the branches angle angle branch ANG m2.MPa-1.s-1 Wood width wood width W-w Wood width Leaf gas exchange protocol at 300 µmol photons m−2 s−1 Leaf gas exchange was assessed with a portable infrared gas analyzer (LI-6400; LI-COR Inc., Lincoln, USA) equipped with a fluorometer (LI-6400-40, LI-COR Inc., Lincoln, USA). Data was periodically collected from the youngest fully expanded leaf (5–9 h after photoperiod initiation), never extending a total period of 90 min. Block temperature was set at 28°C, light intensity was set at 300 µmol photons m−2 s−1 and CO2 concentration was kept at 400 ppm with an air flow rate of 500 µmol s−1. diameter Diameter of terminal bud bud TBD Terminal bud diameter Heterozygosity scoring scale Plant and rock covers are assessed independently in the 10x10 m virtual plot around the tree and with a predefined scoring scale. As the estimations are independent, the total of the two can be > 100% (some plants can grow over rocks). Independant cover protocol Formiga cork quality Formiga status The ant (Cremastogaster scutellaris) that opens wide and sinuous galleries in the suberous tissue BBCH_80 evaluation Assessment of the date when the first fruits of the crown are mature (has changed color or is dried and dehiscent or has fallen) Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 20% of the crown. For pines: 20% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 20% of buds with open-brushed needles. BBCH_12 evaluation width R Plant width at the soil level in spring plant Plant width at the soil level Neighbor distance protocol Measure of the distance between the observed tree and its targeted neighbor Assesment of the allelic richness of the population by estimation of the mean allelic number by locus in the population allelic richness population Allelic richness AR leaf gC stomatal conductance Stomatal conductance, the rate of passage of carbon dioxide (CO2) entering through the stomata of a leaf Stomatal conductance to CO2 ‰ mg/g DW stem Diameter of the tree main stem D Stem diameter diameter Assessment of the date when shoots reached 60% of their final size (deducted a posteriori) BBCH_36 evaluation bud Terminal bud accident Recording of an accident on the terminal bud NAAT accident Thinning protocol Assessment according to the objectives of the scientific protocol Branch diameter scoring scale Assessment of the date when 10% of the foliage turned color (color range depending) or fell BBCH_91 evaluation Pore area protocol None Uredia number protocol Count of uredia formed 14 days after inoculation. Epinasty scoring scale None Assessment of the date when the majority of the flower buds have begun to open BBCH_53 evaluation Photo Name of the file or archive where photo(s) of the tree can be found photo plant observation BBCH_14 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 40% of the crown. For pines: 40% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 40% of buds with open-brushed needles. HPR Enzymatic activity of hydroxypyruvate reductase leaf Enzymatic activity of hydroxypyruvate reductase enzymatic activity None Computation per gram of nitrogen wood BI Earlywood density earlywood Assessment of earlywood density, the softer more porous portion of an annual ring of wood that develops early in the growing season Petiole length length PL petiol Petiole length Visual assessment of the branches angle with a reference scoring scale, on a minimum of two to three successive whorls and discarding the last two whorls. Branches angle protocol 1 parts per million (ppm) cm2/g Cork plank color scoring scale Yes/No Defoliation scoring scale on 5 Assessment of the date when shoots reached 50% of their final size (deducted a posteriori) BBCH_35 evaluation leaf b.myrcene Beta myrcene content molecule content Beta myrcene content fork HFO Height fork Insertion height of the fork height Chlorophyll content in leaves chlorophyll content LCC leaf Leaf chlorophyll content Fork quantity Assessment of forks quantity, appearance of sequential branches with an inclination angle greater than 45° fork FO quantity Competition protocol The distance-dependent competition index is assessed by using the distance and diameter mesures of the 5 nearest neighbors to the target tree. It should also be specified whether they are conspecific or not with the sample tree. Defoliation scoring scale on 3 cm-2 GEL damages plant Assessment of frost damages Frost damage Assessment of the date when shoots reached 80% of their final size (deducted a posteriori) BBCH_38 evaluation Estimated date from polynomial regression of a time series of budflush or budset scores Bud date protocol neighbors Number of alive neighboring trees for a given tree NBVOIS plant Alive neighboring trees Leaf_CO2_curve Leaf CO2 light response curve Leaf CO2 light response curve Hour chlorophyll content Chlorophyll a to b ratio Chl a/b leaf Ratio between chlorophyll a and b content in leaf green tissue Assessment of the date when 70% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) BBCH_87 evaluation roughness Bark roughness BarkR bark Assessment of the roughness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark Slope protocol Starting at the tree, one member of the field team walks 5 meters down and another walks 5 meters upslope. The measure is done using a clinometer and looking at the other´s eyes. Geotropism scoring scale BBCH_85 evaluation Assessment of the date when 50% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) plant REP Number of repetitions Number of replicates used to calculate mean value of an associated replicate Senescence BBCH scoring scale Branches angle scoring scale on 3b diameter EHLD External hypertrophied lenticels diameter lenticel External hypertrophied lenticels diameter Ratio between epicormic branches and epicormics epicormic branche epicormic Ratio epicormic branches/epicormics rEpiBC Drought defects scoring scale status plant STAT Tree status Assessment of the tree status Cork thickness before boiling protocol Corks thickness is measured in eight positions: two in each radial surface and two others in each transversal face. The measured positions are marked for comparison with data obtained after boiling. Assessment of the date when all flower bud are dormants BBCH_50 evaluation Maximum colour level of visible hypertrophied lenticels lenticel DHL color Maximum colour level of visible hypertrophied lenticels method_of number bud TB Buds at the terminal cluster Number of buds at the terminal cluster Soil water availability SWA Amount of water present in the soil water availability soil Canker lesion length protocol Measured in millimeters with a measuring tape at the inoculation point. Most protocol are using 2 or 3 inoculation points per tree. Branches angle scoring scale on 5 enzymatic activity Enzymatic activity of phosphoenolpyruvate carboxylase Enzymatic activity of phosphoenolpyruvate carboxylase leaf PEPc Budflush BBCH scoring scale Expert visual assessment for cork inner surface uniformity Cork plank uniformity protocol Footprint or plan area of the crown of a tree expressed as crown width spread crown crown_size Crown size Lobe ratio protocol None Measured randomly at 130 cm from ground level (approximately breast height) using either a small calliper or ruler (if the bark can be detached without damage for the tree) or with specifically designed bark gauges. Bark thickness protocol Assessment of the date when 60% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) BBCH_86 evaluation mg/cm2 mmol CO2 m-2 s-1 ppm-1 CR-w ring width cork Cork ring width Cork ring width Cork Quality Terrentas/Barrentas cork Terrentas/Barrentas A loose, pulverulent tissue with rounded cells that leave empty spaces between them, whose walls do not always overlap, filling the lenticular channels. It occurs mainly in corks with a special type of porosity in which the pores have a longitudinally conical profile. When this defect manifests itself frequently, the cork is called terrenta or muddy, and in the most severe cases it disables the production of natural cork works. quality mm - no decimal Flexuosity scoring scale on 3 Damage scoring scale Branching scoring scale on 3 Leaf coloration scoring scale scale_of Branches angle scoring scale on 3