1 Angle close to the right angle 1 Flor Root collar diameter CD INRA/IBET DIACOL DCOL RCD DIA_col Célia Michotey/Inês Chaves DIA_C[Adonis] relevo da barriga IBET Inês Chaves BR[Adonis] Inner plank surface relief BR Inner plank surface uniformity Inês Chaves IBET Wood width W_w[Adonis] W-w Tol INRA tol[Adonis] Célia Michotey Tolerance Inês Chaves IBET SuberinThreo2OHoctadecanoicA_CC Suberin Dihydroxyoctadenedioic acid content INRA CHALn3[Adonis] CHAL_n3 Célia Michotey Chalara on the tree - rating on 3 55_NB[Adonis] Floral buds emerged but closed Célia Michotey INRA BBCH_55 All buds dormant or just enlarged 1 13C INRA/IBET d13Cc Carbon 13 13C[Adonis] Wood carbon 13 Célia Michotey/Inês Chaves 97_NB[Adonis] BBCH_97 70% of leaves faded or fallen INRA Célia Michotey IBET Leaf_An_curve Leaf photosynthesis light response curve Inês Chaves COUL LC[Adonis] Célia Michotey LC INRA Leaf color Number of latent buds nLBD nLBD[Adonis] INRA Célia Michotey Célia Michotey DESN[Adonis] INRA/IBET Stem drying up grading DESN BBCH_74 INRA 40% of fruits reached maximum size 74_NB[Adonis] Célia Michotey IBET Polyphenols cork composition Phenols_CC Inês Chaves Shoots reached 30% of their final size (deducted a posteriori) 33 3 Vigorous NBAMD Number of years monopodic - straight tree NBAMD[Adonis] Célia Michotey INRA 18_NB[Adonis] Célia Michotey BBCH_18 INRA 80% of leaves/needles out Leaf mass per leaf area LMA[Adonis] Célia Michotey LMA INRA BBCH_50 Dormant winter flower bud 50_NB[Adonis] Célia Michotey INRA mi[Adonis] Célia Michotey INRA mi Minimal ring density INRA Célia Michotey ESD[Adonis] Detailed health status ESDET nSeqBC INRA nSBC[Adonis] Célia Michotey Number of sequential branches Tree circumference at the collar CIR_B CIR_B[Adonis] CBAS INRA CIR_Base Célia Michotey CIRC_B CIBAS CCO Very late 4 4 deltaC.I ICIR[Adonis] Circumference increment deltaCIRC INRA Célia Michotey deltaC ICIR deltaC.F DCS[Adonis] Célia Michotey INRA Crown dieback status DCS SDM SDW INRA/IBET S_mass Stem dry mass Célia Michotey/Inês Chaves Stem biomass SDM[Adonis] Inês Chaves ESP_B espessura depois de cozido IBET cork thickness after boiling ESP_B[Adonis] He2[Adonis] INRA Célia Michotey He_bis Expected heterozygosity crown_size Crown size crown[Adonis] INRA Célia Michotey Crown spread Canker INRA CANK[Adonis] Célia Michotey Cankers Célia Michotey CRL INRA Rubisco content in leaves RQ RQ[Adonis] DES[Adonis] Number of dry years on the stem INRA Célia Michotey DES net_An IBET Net photosynthesis Inês Chaves Célia Michotey 50% of buds burst 07_NB[Adonis] BBCH_07 INRA Dead -9 INRA Buds ready to burst BBCH_03 Célia Michotey 03_NB[Adonis] CLOI ECL[Adonis] ECL Thinning Célia Michotey INRA Non-photochemical quenching Inês Chaves IBET NPQ Perfect 10 10% of fruits mature Célia Michotey BBCH_81 81_NB[Adonis] INRA Plagiotropy PLAG[Adonis] INRA Célia Michotey PLAG BBCH_60 First flowers sexually mature INRA Célia Michotey 60_NB[Adonis] Soil depth Célia Michotey depth[Adonis] INRA soil_depth Sequential branches angle INRA Célia Michotey aSBC[Adonis] aSeqBC Célia Michotey Amean Mean assimilation rate INRA Amean[Adonis] INRA LCCa LCCa[Adonis] Leaf chlorophyll content per leaf area Célia Michotey Célia Michotey LL[Adonis] Lamina length LL INRA 1/2 of the total height of the plant dry 2 87 70% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Worst 10 Pores Roundness Pores Roundness Inês Chaves IBET PoR[Adonis] NBUC[Adonis] NBUC INRA Célia Michotey Growth unit number 8 100% of crack bark, moderate cracks 4 DP DP[Adonis] INRA Célia Michotey Double feet 99 0% of the foliage turned color (color range depending) or fell Many and/or large branches 3 LWR[Adonis] INRA LWR Lobe width ratio Célia Michotey Inês Chaves Suberin Tyramine content SuberinTyramine_CC IBET Syringaldehyde/Coniferaldehyde contents in wood wood S/G IBET Inês Chaves Lamina shape OB Célia Michotey INRA OB[Adonis] Obversity BarkT[Adonis] BarkT Célia Michotey Bark thickness INRA 39_NB[Adonis] INRA Célia Michotey BBCH_39 Shoots at 90% of their size 10% of shoots at growth stop INRA 40_NB[Adonis] BBCH_40 Célia Michotey nFork[Adonis] Forks number - x-ray Célia Michotey INRA nFork Drought damage defects INRA Célia Michotey DEF_S[Adonis] DEF_SEC D_S NV[Adonis] NV INRA Célia Michotey Number of intercalary veins ? 2 HBM HBM[Adonis] Height first dead branch Célia Michotey INRA PEPc Célia Michotey INRA PEPc[Adonis] Enzymatic activity of phosphoenolpyruvate carboxylase nPBD[Adonis] nPriBD Célia Michotey INRA Number of primary buds Célia Michotey WI WI[Adonis] INRA Withered leaves Inês Chaves Nail size percentage - Tangential section IBET Wood inclusions percentage - Tangential section % nail Area_Ta % Prego-Ta PN-Ta[Adonis] NailInclusionsCoef_Ta INRA CM Leaf carbon content Célia Michotey CM[Adonis] CM.F Very marcescent 3 INRA Célia Michotey BS_s[Adonis] Budset scoring Budset BS_score Allelic richness INRA Célia Michotey AR AR[Adonis] stone[Adonis] stone_content Soil stone content INRA Célia Michotey Chlorophyll a to b ratio IBET Chl a/b Inês Chaves FRUT FRUT[Adonis] INRA Célia Michotey Fructification abundance 2 Leaf quantum yield of photosystem II Inês Chaves PhiPS2 IBET Hanging down (> 90°) 5 RAM[Adonis] INRA Célia Michotey Branching degree RAM 5 Straight Célia Michotey 60% of leaves/needles out BBCH_16 16_NB[Adonis] INRA Shape FOR INRA FOR[Adonis] Célia Michotey Leaf dry mass INRA/IBET L_mass LDM[Adonis] Célia Michotey/Inês Chaves LDM LDW Leaf biomass 5 76–100% buds-burst and have visible needles Petiole ratio PR[Adonis] Célia Michotey PR INRA eels[Adonis] eels Cork Eelness Inês Chaves IBET 1 Cut INRA gC[Adonis] Stomatal conductance to CO2 Célia Michotey gC DT[Adonis] Célia Michotey Trunk diameter below largest branch INRA DT 2 Acute angle greater than 45 ° 40 - 60% Medium Status Célia Michotey INRA STAT[Adonis] STAT 64 40% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. NBPIEDSUP INRA Célia Michotey NBPS[Adonis] Number of additional feet INRA Fructification regularity Célia Michotey FRUC_REG FRU_R[Adonis] SUR[Adonis] Health status ES INRA/IBET SUR MOR Survival Célia Michotey S DF_n3 Defoliation - rating on 3 Célia Michotey INRA DF_n3[Adonis] 5 Tree gone Inês Chaves LWC Leaf water content IBET %nail Area_Tr NailInclusionsCoef_R % Prego-R Nail size percentage - Radial section Inês Chaves Wood inclusions percentage - Radial section area IBET PN-R[Adonis] INRA Leaf nitrogen isotope discrimination Célia Michotey Delta15N d15N D15N[Adonis] delta N15 Needles coloration AIG[Adonis] INRA AIG Célia Michotey Célia Michotey SW[Adonis] Sinus width INRA SW AVR[Adonis] ANVERE INRA Célia Michotey Year reference whorl Co bs Basal sweep Célia Michotey CB INRA CB[Adonis] Suberin Glycerol content Inês Chaves IBET SuberinGlycerol_CC IBET % Pore-Ta % Pore size - Tangential section PorosityCoef_Ta PP-Ta[Adonis] Inês Chaves acronym 1 5 to 25% of the foliage remaining Leaves comes out of 10% of buds 08_NB[Adonis] Célia Michotey INRA BBCH_08 INRA Célia Michotey Alive neighboring trees NBVOIS NBV[Adonis] INRA Ring surface Célia Michotey surf[Adonis] surf INRA FO[Adonis] Fork Célia Michotey FO Up to 50% of affected shoots 2 He[Adonis] Expected heterozygosity Célia Michotey He INRA MAR_coef INRA Marcescence coefficient MARc[Adonis] Célia Michotey Célia Michotey Mean ring density mpond[Adonis] mpond INRA 79_NB[Adonis] Célia Michotey BBCH_79 INRA 90% of fruits reached maximum size LS Leaf surface Célia Michotey INRA LS[Adonis] Circum.UK Célia Michotey/Inês Chaves Circum.F CIR1 Girth at 1m INRA/IBET CIR1[Adonis] Circum.I Tree circumference at 1m INRA Allelic richness AR_bis AR2[Adonis] Célia Michotey 30% of the foliage turned color (color range depending) or fell 93 Moderate to strong bends (severe) 2 IBET Inês Chaves Suberin Alkanols content SuberinAlkanols_CC Budset date in cumulative night length BScnl[Adonis] INRA date_cnl Célia Michotey BS_date_cnl PoresArea_Ta Pore size -Tangential section Pore-Ta Inês Chaves IBET P-Ta[Adonis] WP WP[Adonis] Célia Michotey INRA Lamina largest width INRA DEBFAGUS Budflush scoring - rating on 8 BF_score_n8 Célia Michotey BFSn8[Adonis] NBBR[Adonis] Branches number Célia Michotey INRA NBBRA NBBR Angle[Adonis] Célia Michotey Branch angle - rating on 3 INRA ANG_n3b DCE[Adonis] Pollarding Célia Michotey DCE INRA mid Medium ring density mid[Adonis] Célia Michotey INRA Célia Michotey Number of years with terminal bud accident INRA NAAT[Adonis] NAAT 7 ? Inês Chaves IBET SuberinOHoctadecanoidA_CC Suberin Hydroxyoctadecanoid content SCm[Adonis] SCm Célia Michotey INRA Saccharose content per leaf dry mass INRA Célia Michotey BarkT_mean Bark thickness mean BT_m[Adonis] RDM[Adonis] INRA/IBET R_mass RDW Root biomass Célia Michotey/Inês Chaves Root dry mass RDM ANG_n4 Branch angle - rating on 4 Célia Michotey INRA ANGn4[Adonis] Terpinolene Terpinolene content Célia Michotey INRA 5 1 to 2 cm of diameter at the insertion point 6 Leaves completely unfolded (but smaller in size than mature ones), lengthening of the axis of the shoot evident, scales absent 1 Less than 10% of the leaves have fallen INRA Chlorophyll content per leaf dry mass LCCm LCCm[Adonis] Célia Michotey INRA Célia Michotey RA[Adonis] Ramicorn RA 6 Fork IBET SuberinFerulicA_CC Inês Chaves Suberin Ferulic content Dormant winter bud 1 INRA Célia Michotey Flexuosity - rating on 5 FLXn5[Adonis] FLX_n5 TE[Adonis] INRA Célia Michotey TE Terminal bud dead NBRACH NBR[Adonis] Rachis number Célia Michotey INRA Crown dieback DC[Adonis] INRA/IBET DC DCI Célia Michotey Fork(s) only in the lower half of the tree height 2 90% of leaves/needles out BBCH_19 19_NB[Adonis] INRA Célia Michotey 6 Less than 10% of the area covered 4 HI IH[Adonis] deltaH IHeight INRA Célia Michotey HPOU deltaH.F IH Height increment NM.F NM NM[Adonis] LNC INRA Leaf nitrogen content Célia Michotey preguentas/madeirentas Inês Chaves preguentas/madeirentas IBET INRA 50% of flowers sexually mature BBCH_65 65_NB[Adonis] Célia Michotey Ratio leaf nitrogen to leaf carbon LN/LC[Adonis] INRA Célia Michotey LN/LC INRA Célia Michotey 30_NB[Adonis] BBCH_30 Start of shoot growth INRA Célia Michotey Mean late wood density mBF[Adonis] mBF 80% of the fruits reached their usual maximum size, but did not changed color yet 78 50% of fruits mature Célia Michotey INRA 85_NB[Adonis] BBCH_85 Célia Michotey INRA 3Carene 3 carene content 40% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) 84 15_NB[Adonis] 50% of leaves/needles out Célia Michotey BBCH_15 INRA INRA Soluble protein content per leaf area SPCa SPCa[Adonis] Célia Michotey IBET NS[Adonis] Nail size Prego Wood inclusions Inês Chaves 98_NB[Adonis] BBCH_98 INRA Célia Michotey 80% of leaves faded or fallen AVP Célia Michotey AVP[Adonis] Ability to vegetative propagation INRA INRA 40% of flowers sexually mature BBCH_64 Célia Michotey 64_NB[Adonis] 4 A lot of fruits in two or more sections of the crown BF_CO[Adonis] Conifers budflush scoring Célia Michotey BF_score_CO INRA absence 0 KS Célia Michotey KS[Adonis] INRA Xylem hydraulic conductivity 1 More than 5 cm of diameter at the insertion point Célia Michotey INRA Shoots at 10% of their size BBCH_31 31_NB[Adonis] Xylem pressure INRA Célia Michotey P50[Adonis] P50 Fructification note Célia Michotey FRUCN INRA FRUCN[Adonis] Dead 1 Inês Chaves PL-R[Adonis] Pore Length - Radial section IBET PoresLength_R Pore_L-R Cork plank thickness Caliber IBET Cal[Adonis] calibre Cal Inês Chaves CR-w Inês Chaves Cork ring width IBET CR-w[Adonis] 12_NB[Adonis] 20% of leaves/needles out Célia Michotey BBCH_12 INRA NBRA INRA NBRA[Adonis] Ramicorn number Célia Michotey Shoots reached 80% of their final size (deducted a posteriori) 38 Enzymatic activity of glycolate oxydase GO[Adonis] INRA Célia Michotey GO COM COM[Adonis] DESC Célia Michotey Observations INRA Comments Up to 99% of affected shoots, tree almost dead 4 1 damage to the n-1 shoot Chalara on the tree lower part INRA CHALinf CHAB[Adonis] CHALB Célia Michotey VER VER[Adonis] Deviation from verticality Célia Michotey INRA ? 1 0 Smooth bark, no cracks 36_NB[Adonis] INRA Célia Michotey Shoots at 60% of their size BBCH_36 Lobe width INRA Célia Michotey LW[Adonis] LW 40% of leaves/needles out 14_NB[Adonis] Célia Michotey BBCH_14 INRA Célia Michotey INRA DIST[Adonis] DIST Distance individual/neighbor LCC Célia Michotey INRA Leaf chlorophyll content LCC[Adonis] PP-R[Adonis] % Pore-R % Pore size - Radial section PorosityCoef_R Inês Chaves IBET No symptom 0 cov1[Adonis] Célia Michotey cover1 Independant Vegetation/Rock cover INRA 35_NB[Adonis] BBCH_35 Célia Michotey Shoots at 50% of their size INRA Collar Chalara Célia Michotey CHALCOL CHALC[Adonis] INRA LCH VI_BF[Adonis] INRA Célia Michotey Variance of late wood density values varintraBF INRA Célia Michotey Stomatal density STOM[Adonis] STOM Codominant tree 2 GIBN[Adonis] GIBN INRA Célia Michotey Game damage note Inês Chaves Wood fibers lengh IBET WF-l[Adonis] WF-l Sabinene content sabinene Célia Michotey INRA Game damage 9 INRA HRf[Adonis] Pubescence in lamina central part HRf Célia Michotey nP Célia Michotey Number of primary branching nP[Adonis] INRA ARM[Adonis] INRA ARM Célia Michotey ARMILL Armillaria Amax Maximum assimilation rate INRA Célia Michotey Amax[Adonis] Wood fibers thickness WF-t WF-t[Adonis] IBET Inês Chaves INRA Célia Michotey US mer_ls Uredinia size US[Adonis] Célia Michotey ROU[Adonis] Rust INRA ROU Célia Michotey vEBC[Adonis] INRA vEpiBC Epicormic branch volume 60% of fruits reached maximum size 76_NB[Adonis] Célia Michotey BBCH_76 INRA Height first living branch HBV[Adonis] Célia Michotey HBV INRA date15.I date15.3.F date15.F BS_d[Adonis] Budset date INRA date15.UK date15.3 date15 BS_date Célia Michotey Célia Michotey Gamma cadidene content g.cadidene INRA IBET Wood inclusions area - Tangential section area nail Area_Ta Nail size area - Tangential section NS-Ta[Adonis] Prego-Ta Inês Chaves NBASD[Adonis] NBASD Célia Michotey Number of years sympodic - straight tree INRA Célia Michotey INRA BF_BBCH BF_NB[Adonis] Budflush BBCH IBET Lenticels : number of cells alongating/expanding N-AEL[Adonis] N-A&E_lent Inês Chaves 3 Accidentally cut INRA Célia Michotey CARa[Adonis] Carotenoid content per leaf area CARa CLL[Adonis] canker_length Canker.length INRA/IBET Canker_LL Célia Michotey Canker lesion length 90% of leaves faded or fallen INRA Célia Michotey BBCH_99 99_NB[Adonis] INRA Célia Michotey SEL Phenotypic note SEL[Adonis] 4 Polycyclism on the terminal and lateral shoots and these lateral shoots are codominant INRA SAR SAR[Adonis] Specific activity of Rubisco in leaves Célia Michotey Célia Michotey INRA Delta cadidene content d.cadidene Lenticels : number of cells dividing N-DL[Adonis] N-div_lent Inês Chaves IBET 70% of the foliage turned color (color range depending) or fell 97 75 50% of the fruits reached their usual maximum size, but did not changed color yet Natural regeneration regeneration INRA Célia Michotey rege[Adonis] R[Adonis] Plant width at the soil level Célia Michotey INRA R 2 Angle between 30 and 40° TB[Adonis] INRA Number of buds at the terminal cluster Célia Michotey TB NBAMF[Adonis] Célia Michotey INRA Number of years monopodic - forked tree NBAMF rEpiBC rEBC[Adonis] Célia Michotey Epicormic branches per epicormics INRA Cork annual growth CAG[Adonis] AnnualGrowth Cork AG Inês Chaves IBET Intra-ring variance INRA VIC[Adonis] varintracerne Célia Michotey Top dry cs DOC[Adonis] Célia Michotey Dissolved oxygen content INRA DOC THL THL[Adonis] Célia Michotey INRA Total hypertrophied lenticels INRA Célia Michotey Epinasty EPI[Adonis] EPI Wood infradensity WID WID[Adonis] Inês Chaves IBET Number of sylleptic shoots INRA Célia Michotey Syllep Syllep.I Syllep.F Syllep.UK RAMA Sylle[Adonis] IBET Inês Chaves ETR Leaf electron transport rate ST ST[Adonis] Célia Michotey Leaf Staining INRA FLX5b[Adonis] INRA FLX_n5b Flexuosity - rating on 5b Célia Michotey BBCH_61 INRA Célia Michotey 61_NB[Adonis] 10% of flowers sexually mature INRA Célia Michotey SECN Drought damage note NSEC[Adonis] INRA 70% of flowers sexually mature BBCH_67 Célia Michotey 67_NB[Adonis] Penetration opposition PIL[Adonis] Célia Michotey INRA PIL Célia Michotey INRA LP LP[Adonis] Leaf perimeter INRA Célia Michotey Total number of leaves NLV[Adonis] NLV 38_NB[Adonis] BBCH_38 Shoots at 80% of their size Célia Michotey INRA INRA Célia Michotey 50% of buds with juvenile coloration BBCH_45 45_NB[Adonis] 2 cov2[Adonis] INRA Célia Michotey cover2 Relative Vegetation/Rock cover BBCH_70 Célia Michotey 70_NB[Adonis] First fruits reached maximum size INRA INRA 60% of flowers sexually mature BBCH_66 66_NB[Adonis] Célia Michotey Inês Chaves IBET Lenticels : number of cells lygnifying N-Lygn_lent N-LL[Adonis] BRAn5[Adonis] Célia Michotey BRA_n5 INRA Branching - rating on 5 scales 50% of leaves faded or fallen BBCH_95 INRA Célia Michotey 95_NB[Adonis] Suberin Trihydroxyoctadecanoic content IBET SuberinThreo3OHoctadecanoicA_CC Inês Chaves Plant biomass Plant dry weight Total_mass INRA/IBET Dry matter TDM TDM[Adonis] Célia Michotey/Inês Chaves PDW 3 Chalara very present BBCH_77 Célia Michotey 77_NB[Adonis] INRA 70% of fruits reached maximum size 34 Shoots reached 40% of their final size (deducted a posteriori) 5 Delgadinha (6 to 8 linhas or 14 to 18 mm) IBET Pore_Round-R PR-R[Adonis] PoresRoundness_R Pore Roundness - Radial section Inês Chaves REP[Adonis] Number of repetitions REP Célia Michotey INRA LD INRA LD[Adonis] Latent Period Célia Michotey Nothing 0 NDEFV[Adonis] Célia Michotey INRA NBDEF_V Whorl defects P-R[Adonis] Inês Chaves PoresArea_R IBET Pore-R Pore size - Radial section Vigor INRA Célia Michotey GR Tree growth GR[Adonis] INRA PL PL[Adonis] Célia Michotey Petiole length fch Forks GS[Adonis] Enzymatic activity of Glutamine Célia Michotey GS INRA Inês Chaves cork H/S/G IBET Hydroxyphenylaldehyde/Syringaldehyde/Coniferaldehyde contents in cork Célia Michotey FOSn4[Adonis] INRA FO_score_n4 Forking score - rating on 4 Seeds GRA[Adonis] INRA Célia Michotey GRA Gr Célia Michotey INRA 63_NB[Adonis] 30% of flowers sexually mature BBCH_63 Fork(s) only in upper half of the tree height 3 Number of years sympotic - forked tree NBASF[Adonis] INRA NBASF Célia Michotey Célia Michotey Variance of early wood density values varintraBI VI_BI[Adonis] INRA UN[Adonis] Uredinia Number Célia Michotey INRA UN Growth stop AC August shots INRA Célia Michotey AC[Adonis] Kept 0 WCC[Adonis] Célia Michotey/Inês Chaves WCC Cellulose wood composition INRA/IBET Célia Michotey Lamina basal shape INRA BS[Adonis] BS Refugo 7 NBDP NBDP[Adonis] Double feet number Célia Michotey INRA Fork gone and not transformed into a large branch 0 FOSn5[Adonis] Célia Michotey Forking score - rating on 5 INRA FO_score_n5 NbA NbA[Adonis] Célia Michotey Number of alleles INRA INRA Célia Michotey ND[Adonis] Number of day to reach budburst ND Number of lobes NL INRA Célia Michotey NL[Adonis] Tree completely dry, the main axis and lateral shoots remain 1 HRn[Adonis] Pubescence along the veins INRA HRn Célia Michotey 3 2nd quarter (between 45° and 67°) Medium 1 Célia Michotey MaxWi INRA MaxWi[Adonis] Maximum water use efficiency 5 - 20% Little 5 Between 10 and 25% of the area covered LNCm[Adonis] Leaf nitrogen content per leaf dry mass INRA/IBET LNCm Célia Michotey/Inês Chaves Célia Michotey %N %N[Adonis] Leaf nitrogen content INRA %N IBET Hydrogen 2 Inês Chaves 2H[Adonis] 2H Wood Hydrogen 2 P-Tr[Adonis] Pore size - Transversal section Inês Chaves PoresArea_Tr IBET Pore-Tr Ci Internal CO2 concentration Inês Chaves IBET SI[Adonis] Stomatal index Célia Michotey INRA SI IBET SuberinAlkanoicA_CC Suberin Hydroxyalkanoic content Inês Chaves ? 5 Marcescent 2 Marcescence - rating on 6 MARn6[Adonis] Célia Michotey MAR_n6 INRA INRA 11_NB[Adonis] 10% of leaves/needles out Célia Michotey BBCH_11 Célia Michotey Fructification abundance INRA FRU_A[Adonis] FRUC_AB C_nbF[Adonis] Chalara influence on leaves INRA Célia Michotey CHAL_nbF INRA Temp_MIN Mean minimum temperature Célia Michotey Less than 10% of affected shoots 1 INRA ANG_n5 Branch angle - rating on 5 ANGn5[Adonis] Célia Michotey 50% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) 85 Number of latent secondary buds nSecLBD INRA Célia Michotey nSLBD[Adonis] Wood vessels cell wall thickness WV-t[Adonis] Inês Chaves IBET WV-CW-t Very numerous branches, large, concentrated double at the whorls and/or distributed along the shoot 1 na Missing data Leaf carboxylation efficiency IBET An/Ci Inês Chaves INRA a.pinene Alpha pinene content Célia Michotey ? 6 Leaning tree 3 Inês Chaves Pore_Round-Ta IBET PR-Ta[Adonis] PoresRoundness_Ta Pore Roundness - Tangential section nEBC[Adonis] INRA Célia Michotey Number of epicormic branches nEpiBC Senescence SEN[Adonis] SEN INRA Célia Michotey IRD[Adonis] drd Célia Michotey INRA Increase of diameter below the apical bud NF NF[Adonis] Célia Michotey Number of flushes INRA Bud swelling and expanding with scales slightly diverging, presence of one or more droplets of balsam 2 GEL[Adonis] GEL INRA/IBET Célia Michotey Frost damage Fructification CON FRUC[Adonis] Célia Michotey FRUC INRA INRA het5 max5-min5 het5[Adonis] Célia Michotey DGB Diameter largest branch DGB[Adonis] INRA Célia Michotey 50 to 75% of the leaves have fallen 3 Lobe depth ratio Célia Michotey LDR INRA LDR[Adonis] Célia Michotey 80% of fruits mature BBCH_88 88_NB[Adonis] INRA 1 Cracks fts 5 Pore_Round-Tr Inês Chaves PR-Tr[Adonis] Pore Roundness - Transverse section PoresRoundness_Tr IBET INRA BBCH_53 Flower buds opening Célia Michotey 53_NB[Adonis] Shoots at 30% of their size BBCH_33 Célia Michotey INRA 33_NB[Adonis] Slenderness Célia Michotey INRA HD C_EL El C_El[Adonis] 1 Low allelic diversity Célia Michotey INRA Beta pinene content b.pinene Camphene content Célia Michotey camphene INRA 0 Nothing, no chalara IBET PoresLength_Tr Inês Chaves PL-Tr[Adonis] Pore_L-Tr Pore Length - Transversal section Beautiful tree, to keep 3 Célia Michotey EP[Adonis] INRA EP Epidermal cells per adaxial leaf area Célia Michotey BBCH_80 INRA First fruits mature 80_NB[Adonis] 1st quarter (between 67° and 90°) 4 NbFourches NBF Forks number NF Célia Michotey INRA NBFO NBFO[Adonis] The majority of floral buds have emerged from the buds but are closed. Flowers with petals: the majority of flower buds have emerged from the buds and are still closed, but the colour of the petals is visible. Male flowers in catkins: the catkins are at the end of lengthening, the scales begin to move apart. Other flowers: stamens begin to be visible. 55 0 Alive and unfrozen WHC[Adonis] INRA/IBET Hemicellulose wood composition Célia Michotey/Inês Chaves WHC BBCH_93 Célia Michotey 93_NB[Adonis] 30% of leaves faded or fallen INRA C/N Leaf carbon-to-nitrogen ratio Célia Michotey INRA C/N C/N[Adonis] C:N Célia Michotey BBCH_87 INRA 70% of fruits mature 87_NB[Adonis] BRR[Adonis] INRA Célia Michotey BRR Straightened branch SEN_BBCH Senescence BBCH Célia Michotey SE_NB[Adonis] INRA 0 Null Delta13C Leaf carbone isotope discrimination D13C[Adonis] Célia Michotey Delta.F discriC13 delta-13C INRA/IBET d13Cf delta C13 d13C 0 No polycyclism Buds swelling 01_NB[Adonis] INRA Célia Michotey BBCH_01 Bud-burst, first green is visible (intermediate) 2 94_NB[Adonis] INRA Célia Michotey 40% of leaves faded or fallen BBCH_94 INRA Célia Michotey 82_NB[Adonis] BBCH_82 20% of fruits mature Harvest REC[Adonis] Célia Michotey INRA REC 18 Broadleaves: the first leaves are spread on about 80% of the crown. Pines: 80% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 80% of buds with open-brushed needles FSE FS INRA/IBET SEC SEC[Adonis] Drought damage Célia Michotey Shoots reached 10% of their final size (deducted a posteriori) 31 3 Slight to moderate bends in different directions (weak) 7 TPgCa Célia Michotey Total pigments content per leaf area INRA TPgCa[Adonis] 1 Green 4 Presence of attack and necrosis on a lateral shoot BBCH_91 10% of leaves faded or fallen 91_NB[Adonis] INRA Célia Michotey Inês Chaves cork S/G IBET Syringaldehyde/Coniferaldehyde contents in cork Alpha copaene content Célia Michotey a.copaene INRA Célia Michotey GELN[Adonis] Frost damage note GELN INRA/IBET 2 Crown completely yellow Dormant winter bud 1 1 Alive and frozen INRA Branching habit BRAH Célia Michotey BRAH[Adonis] Percentage venation INRA Célia Michotey PV[Adonis] PV Cork discontinuities enguy[Adonis] enguy Inês Chaves IBET Forks developed both in upper and in lower half of the tree height 1 2 10 to 25% of the leaves have fallen 26-50% buds-burst and have visible needles 3 LONG LPOUS LB Célia Michotey INRA LPOUS[Adonis] Shoot length Branch length Inês Chaves IBET RWC Root water content Cork Quality IBET QUAL[Adonis] QUAL Inês Chaves Célia Michotey RQm Rubisco quantity per leaf dry mass INRA RQm[Adonis] 3 White bud (hair) 67 70% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. INRA/IBET HTm[Adonis] HTm Hm Tree total height in m Célia Michotey 2 More than 15-20 hypertrophied lenticels Between 60° and 90° (plain) 3 Célia Michotey INRA BF_score_n3 BFSn3[Adonis] Budflush scoring - rating on 3 Doubtful 1 CHALH CHALHa Chalara on the tree upper part INRA Célia Michotey CHAH[Adonis] 1 to 2 strong curves 3 INRA Célia Michotey Mean maximum temperature Temp_MAX Célia Michotey FO_i[Adonis] INRA Forking index FO_index Fork_index TRW[Adonis] INRA/IBET Growth ring width Tree ring width Célia Michotey/Inês Chaves I RW TRW ARW Annual ring width Célia Michotey Chalara on the tree - rating on 5 CHAL_n5 CHALn5[Adonis] INRA Inês Chaves Wood Hydrogen 1 Hydrogen 1 1H[Adonis] IBET 1H INRA Diameter of terminal bud Célia Michotey TBD[Adonis] TBD IBET Photosynthetic rate - light curve Inês Chaves An_LightCurve_leaf An_LightCurve Shoots INRA Célia Michotey Shoots.F Number of resprouts Shoots.UK Shoot[Adonis] Shoots.I Competition Célia Michotey INRA COMP COMP[Adonis] DBRA Célia Michotey GBRA DBRA[Adonis] Branche diameter INRA 51_NB[Adonis] Célia Michotey Flower buds swelling BBCH_51 INRA Dominant tree 3 Maximal ring density ma INRA Célia Michotey ma[Adonis] Gs Inês Chaves Transpiration rate IBET 2 90° INRA nPriLBD Number of latent primary buds nPLBD[Adonis] Célia Michotey INRA BBCH_49 49_NB[Adonis] Célia Michotey 50% of buds lignified and mature 83 30% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) 2 % Pore-Tr PP-Tr[Adonis] PorosityCoef_Tr % Pore size - Transversal section Inês Chaves IBET P_F[Adonis] Célia Michotey P_F Petiols without leaves INRA PETIOL 61 10% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. Alpha humulene content INRA Célia Michotey a.humulene Woodpecker Woodp[Adonis] Inês Chaves Pica-pau IBET Woodpecker 3 ? Water use efficiency Inês Chaves WUE[Adonis] WUE IBET 17_NB[Adonis] INRA Célia Michotey 70% of leaves/needles out BBCH_17 Game damage Célia Michotey GIB[Adonis] INRA/IBET GIB 5 Number of secondary buds nSecBD INRA Célia Michotey nSBD[Adonis] 5 Total girdling of tree stem with associated mortality of the apex INRA Célia Michotey CLCA[Adonis] Chrysomela leaf consumed area Chrysomela Inês Chaves NS-R[Adonis] IBET Nail size area - Radial section nail Area_R Prego-R Wood inclusions area - Radial section CNB[Adonis] NBCHA INRA Célia Michotey Canker number Canker_nb NBCH Winter dormant flower bud 50 Célia Michotey INRA Ho[Adonis] Observed heterozygosity Ho PoA[Adonis] Pores Area Pores Area Inês Chaves IBET INRA Célia Michotey CHALH[Adonis] Crown Chalara CHALHOU entity 5 Célia Michotey BiomF BioF[Adonis] BioF Foliar biomass INRA INRA/IBET S/RDM[Adonis] Shoot/Root dry mass Célia Michotey/Inês Chaves SDM/RDM S:R S/RDM INRA Célia Michotey Dormant winter buds 00_NB[Adonis] BBCH_00 Leaf area INRA/IBET LA[Adonis] LA Célia Michotey/Inês Chaves LAR Budflush.I Budflush.UK Célia Michotey Budflush DEB Bud burst Budflush.F BF_BL[Adonis] Broadleaves budflush scoring Bud break INRA BF_score_BL INRA Célia Michotey BBCH_37 Shoots at 70% of their size 37_NB[Adonis] WV-d[Adonis] WV-d Inês Chaves Wood vessels diameter IBET Inês Chaves Wood axial parenchyma thickness IBET WAP-t WAP-t[Adonis] WRP-h Inês Chaves Wood radial parenchyma high IBET WRP-h[Adonis] DEVFO INRA Célia Michotey Become of fork DEVFO[Adonis] 36 Shoots reached 60% of their final size (deducted a posteriori) 4 MWi Célia Michotey INRA Mean intrinsic water use efficiency MWi[Adonis] 90% of fruits mature INRA 89_NB[Adonis] BBCH_89 Célia Michotey Broadleaves: the first leaves are spread on about 50% of the crown. Pines: 50% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 50% of buds with open-brushed needles 15 BF_B[Adonis] INRA Célia Michotey Bud burst BF_score_B 0 On no branches Célia Michotey/Inês Chaves WC% WCP[Adonis] Percentage of compression wood INRA/IBET Inês Chaves IBET Pores Frequency PoF[Adonis] Pores Frequency Wood radial parenchyma thickness Inês Chaves IBET WRP-t[Adonis] WRP-t BBCH_96 Célia Michotey INRA 96_NB[Adonis] 60% of leaves faded or fallen Enzymatic activity of hydroxypyruvate reductase HPR HPR[Adonis] Célia Michotey INRA Beta myrcene content b.myrcene Célia Michotey INRA 80% of flowers sexually mature INRA Célia Michotey 68_NB[Adonis] BBCH_68 63 30% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. INRA BBCH_72 72_NB[Adonis] 20% of fruits reached maximum size Célia Michotey 3 75% of crack bark Célia Michotey/Inês Chaves Percentage of tension wood WTP[Adonis] INRA/IBET WT% Photosystem II operating efficiency AnII_Ef Inês Chaves IBET On all branches 2 Cork Porosity %Pores Inês Chaves PP[Adonis] IBET 1/4 of the total height of the plant dry 1 50% of smooth bark, moderate cracks 2 1 to 2 very strong curves 2 NBPIED Feet number Célia Michotey INRA NBP[Adonis] Célia Michotey Vol Vol[Adonis] Volume INRA Alive 0 BC[Adonis] Inês Chaves color da barriga BC Inner plank surface color IBET cor da barriga Competition index INRA NCI Célia Michotey NCI[Adonis] Angle between 0 and 30° 1 TPCm[Adonis] INRA Total protein content per leaf dry mass Célia Michotey TPCm 72 20% of the fruits reached their usual maximum size, but did not changed color yet 83_NB[Adonis] 30% of fruits mature INRA Célia Michotey BBCH_83 IBET WD[Adonis] Wood density Inês Chaves WD 3 More than 2 rolled-up young leaves EHLD Célia Michotey EHLD[Adonis] INRA External hypertrophied lenticels diameter INRA Célia Michotey %C %C[Adonis] Leaf carbon content Blossoming FLO[Adonis] INRA Célia Michotey FLO Célia Michotey Survival rate SUR_R[Adonis] INRA SUR_Rate 2 Intermediate ID[Adonis] INRA Célia Michotey Identification ID canop[Adonis] INRA Célia Michotey canopy_projection Canopy projection 3 TPgCm[Adonis] Célia Michotey INRA Total pigments content per leaf dry mass TpgCm 4 ? 4 Célia Michotey ACC[Adonis] INRA Annual increase ACC 3 3 to 4 cm of diameter at the insertion point 1 F1 fully stretched with juvenile aspect, F2 comparable to older leaves apical bud not fully closed First leaves faded or fallen BBCH_90 90_NB[Adonis] INRA Célia Michotey BarkR INRA Célia Michotey BarkR[Adonis] Bark roughness RD Diameter below terminal bud RD[Adonis] Célia Michotey INRA INRA Célia Michotey 50% of fruits reached maximum size BBCH_75 75_NB[Adonis] Inês Chaves SuberinEctadecanedioidA_CC IBET Suberin Ectadecanedioid content Thin and few branches 5 5 Dead tree NBCH[Adonis] Célia Michotey NBCH INRA Collar canker number 0 Apical bud red brown Célia Michotey INRA Date maximum color level of visible hypertrophied lenticels DHL DHL[Adonis] INRA/IBET SLA SLA[Adonis] Célia Michotey/Inês Chaves SLAR Specific leaf area 2 Main axis completely dry from the ground, some healthy shoots Presence of a few sores (10 max) difficult to detect 2 12C[Adonis] IBET 12C Wood Carbon 12 Carbon 12 Inês Chaves DEV_BBCH Growth BBCH Célia Michotey DV_NB[Adonis] INRA 2 Marca (14 to 18 linhas or 32 to 40 mm) Inês Chaves Cork thickness before boiling ESP[Adonis] thickness IBET espessura ESP Célia Michotey NBBRM[Adonis] NBBRM Nomber of master branches INRA 1 Dormant winter bud (late flushing) Nests number Célia Michotey NBN[Adonis] INRA NBNPRO NBN Inês Chaves IBET Chl b Chlorophyll b 73 30% of the fruits reached their usual maximum size, but did not changed color yet CARm Carotenoid content per leaf dry mass Célia Michotey INRA CARm[Adonis] INRA/IBET Canker girdling index girdling_index Canker_GI Girdling.index CGI[Adonis] Célia Michotey gW INRA Célia Michotey Stomatal conductance to water vapour gW[Adonis] IBET An Photosynthetic rate Inês Chaves No marcescent 0 5 Tree unharmed, not attacked A[Adonis] Célia Michotey A INRA Assimilation rate aspect INRA Célia Michotey expo[Adonis] Individual aspect HTF INRA HFO Célia Michotey Height fork HFO[Adonis] 3 Presence of attack and necrosis on one or more main axes RQa RQa[Adonis] Rubisco quantity per leaf area INRA Célia Michotey Ci130 C130 Célia Michotey Tree circumference CIR INRA Tree girth CIR[Adonis] 2 Canker is developed along between 20% and 40% of stem circumference IBET Number of debarkings N-deb[Adonis] N-debark Inês Chaves 51-75% buds-burst and have visible needles 4 1 Chalara difficult to see or visible but weak Branch angle - rating on 3 ANGn3[Adonis] INRA Célia Michotey ANG_n3 BBCH_73 30% of fruits reached maximum size 73_NB[Adonis] Célia Michotey INRA Embossed leaves 6 INRA Célia Michotey vSBC[Adonis] vSeqBC Sequential branches volume IBET Leaf_CO2_curve Leaf CO2 light response curve Inês Chaves % nail Area_Tr PN-Tr[Adonis] Wood inclusions percentage - Transversal section NailInclusionsCoef_Tr % Prego-Tr Inês Chaves Nail size percentage - Transversal section IBET Célia Michotey Forking year INRA ANFO[Adonis] ANFO Stem_L Stem length Inês Chaves IBET BRAn3[Adonis] BRA_n3 Célia Michotey INRA Branching - rating on 3 Branch (ramicorn; thinner than a fork) with a similar angle 4 2 Scattered: few, scattered individuals High allelic diversity 3 06_NB[Adonis] BBCH_06 10% of the bud burst INRA Célia Michotey Leaf number Lf[Adonis] Inês Chaves Lf IBET 1 Tree to cut Terrentas/Barrentas Terrentas/Barrentas Inês Chaves IBET Low 20 - 40% WoodyPlant ontology Budflush date BF_d[Adonis] Budburst date BF_date Célia Michotey INRA INRA Célia Michotey RQp RQp[Adonis] Rubisco content per gram of proteins INRA Célia Michotey elev[Adonis] Elevation elevation TH Height.F Célia Michotey HT H HT[Adonis] INRA/IBET Height.I Height.UK Tree total height Inst_Carbon_eff Instantaneous carboxylation efficiency Inês Chaves IBET 1 Below 30° (steep) INRA Célia Michotey SEX[Adonis] SEX Sex determination INRA Célia Michotey Shoots at 40% of their size BBCH_34 34_NB[Adonis] Beta caryophyllene content Célia Michotey INRA b.caryophyllene 13_NB[Adonis] Célia Michotey 30% of leaves/needles out INRA BBCH_13 50 to 100% of the leaves have fallen 3 INRA Célia Michotey SACL SACL[Adonis] Leaf saccharose content 2 rolled-up young leaves at equal height 2,5 INRA Germacrene content germacrene Célia Michotey The needle stretches up to twice the size of the bud, the needles are still tight to the shoot if bud scales are still there or they are splayed out 4 Buds completely opened with leaves still clustered together but flushing, scales still present 4 8 Spread leaves, long shoot 3 More than 10 non-agglomerated sores Health status Célia Michotey ESb SURb INRA Survival SURb[Adonis] Dormant winter bud completely enveloped by the scales (perulae) 1 INRA SHDM[Adonis] Célia Michotey Shoot dry mass SHDM 2 Polycyclism on the terminal and lateral shoots and these lateral shoots remain dominated 86_NB[Adonis] Célia Michotey 60% of fruits mature BBCH_86 INRA Polycyclism nature INRA Célia Michotey POLY[Adonis] POLY -9 Dead 1 More than 2 very strong curves Boa 3 1 Crown with brownish foliage and needle fall 96 60% of the foliage turned color (color range depending) or fell Budflush precocity BF_p[Adonis] Célia Michotey INRA BF_prec 60 - 80% High Medium heterozygosity 2 62 20% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. Late 3 80 - 95% Very high Low marcescence 1 INRA NBS[Adonis] Célia Michotey TAI Secateur knocks number NBS 89 90% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) INRA Harvest date RECD Célia Michotey RECD[Adonis] Célia Michotey INRA Health status red strip ESBR[Adonis] ESBR 94 40% of the foliage turned color (color range depending) or fell Canker_LLC CLLC[Adonis] Célia Michotey CCH Canker cumulative length INRA 2 More than 1 pollarding Number of individuals INRA NbI NbI[Adonis] Célia Michotey 10% of fruits reached maximum size INRA Célia Michotey BBCH_71 71_NB[Adonis] Superior 2 Alpha cubebene content a.cubebene INRA Célia Michotey Inês Chaves Suberin Enedioic content IBET SuberinEnedioicA_CC 10 Best color 1 0 Crown without damage INRA Célia Michotey Defoliation - rating on 5 DF_n5 DF_n5[Adonis] Broadleaves: the first leaves are spread on about 40% of the crown. Pines: 40% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 40% of buds with open-brushed needles 14 gwmean[Adonis] gwmean Mean stomatal conductance Célia Michotey INRA IBET Wood axial parenchyma high WAP-h[Adonis] WAP-h Inês Chaves Fraca 6 Célia Michotey GOU Epicormic branches GOU[Adonis] GOURM INRA 65 50% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_10 10_NB[Adonis] INRA Célia Michotey First leaves/needles out LNCa INRA/IBET LNCa[Adonis] Leaf nitrogen content per leaf area Célia Michotey/Inês Chaves 4 2 to 3 cm of diameter at the insertion point 11 Broadleaves: the first leaves are spread on about 10% of the crown. Pines: 10% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 10% of buds with open-brushed needles INRA max5[Adonis] Célia Michotey Mean strongest density values max5 At least 10% of the bud burst. Leaves appear between the scales. In pines, the bud lengthens and the needles remain inside their sheath which takes a silver tint; we see the green base of the needles. In other conifers, the needles begin to be visible. 06 NBF[Adonis] Célia Michotey NbCones NBF INRA Nb_cone Fruits/Cones number Nb_cones NBCON Monoecious (both male and female) 0 nail Area_Tr Prego-Tr NS-Tr[Adonis] IBET Wood inclusions area - Transversal section area Nail size area - Transversal section Inês Chaves 51 The majority of the flower buds began to swell 4th quarter (below 23°) 1 71 10% of the fruits reached their usual maximum size, but did not changed color yet 16 Broadleaves: the first leaves are spread on about 60% of the crown. Pines: 60% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 60% of buds with open-brushed needles Célia Michotey MFL[Adonis] INRA Mean flush length MFL Dead 2 PoLe[Adonis] Inês Chaves Pores Length Pores Length IBET 1,5 F2 fully stretched transition to bud structure Marcescence - rating on 4 MARn4[Adonis] MAR_n4 Célia Michotey INRA FLXn3[Adonis] FLX_n3 Flexuosity - rating on 3 Célia Michotey INRA IBET Stem diameter Stem_D Inês Chaves 5 No leaves have fallen, the tree is still green 100 % feuillé, bien vert 4 Very vigorous 4 Dry tree 1 Less than 10% of the leaves have fallen 0 Worst color 60% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) 86 0,5 F1 fully stretched comparable to older leaves apical but of older leaves, apical bud of fully closed between green and red Formi[Adonis] Inês Chaves Formiga IBET Formiga Célia Michotey INRA Height largest branch HGB HGB[Adonis] Polycyclism only on the terminal shoot 1 Célia Michotey 32_NB[Adonis] BBCH_32 INRA Shoots at 20% of their size 4 Thin branches but distributed along the shoot SuberinOleicA_CC Suberin Oleic content Inês Chaves IBET F2 fully stretched no bud structure 2 Célia Michotey Photo INRA photo photo[Adonis] PoresLength_Ta Inês Chaves Pore_L-Ta PL-Ta[Adonis] Pore Length - Tangential section IBET 2 Less vigorous Average tree 2 No damage 1 Number of epicormics nEpis Célia Michotey INRA nE[Adonis] Fructification BBCH FRUC_BBCH INRA Célia Michotey FR_NB[Adonis] Inês Chaves Cobrilha IBET Cobrilha Cobri[Adonis] Inflated bud 2 IBET TSuberin_CC Total suberin content Inês Chaves 2 Medium allelic diversity Sampling ECH[Adonis] Célia Michotey ECH INRA Fis[Adonis] INRA Célia Michotey Fis Fixation index 4 Fairly straight, slightly crooked in one direction (weak) gwmax gwmax[Adonis] Célia Michotey INRA Maximum stomatal conductance Soil water availability Inês Chaves SWA IBET 7 Almost spread leaves, start of shoot IBET LRWC Leaf relative water content Inês Chaves 1-25% buds-burst and have visible needles are visible 2 0 No branch INRA Célia Michotey 90% of flowers sexually mature 69_NB[Adonis] BBCH_69 0 No hypertrophied lenticels Completely defoliated 0 92 20% of the foliage turned color (color range depending) or fell 17 Broadleaves: the first leaves are spread on about 70% of the crown. Pines: 70% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 70% of buds with open-brushed needles Chl a Chlorophyll a Inês Chaves IBET HTr[Adonis] INRA Célia Michotey HTrunk Height trunk INRA FLO_BBCH FL_NB[Adonis] Blossoming BBCH Célia Michotey Média 4 presence 1 INRA Célia Michotey 84_NB[Adonis] BBCH_84 40% of fruits mature 10% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) 81 79 90% of the fruits reached their usual maximum size, but did not changed color yet Numerous branches concentrated at whorls 2 Fruits/Cones number mean NBF_mean NBF_m[Adonis] Célia Michotey INRA Fork in middle third of the tree 2 Célia Michotey INRA RQn RQn[Adonis] Rubisco quantity per gram of nitrogen 1 Orthotropic 2 A few fruits in two or more sections of the crown DEF[Adonis] D_P INRA Célia Michotey Plant defects DEF Doubtful -5 Dead -5 Célia Michotey D DBH DBH[Adonis] DIA INRA/IBET Tree diameter BBCH_92 INRA Célia Michotey 20% of leaves faded or fallen 92_NB[Adonis] 88 80% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Fairly large but few branches per whorl 3 1 Dominated tree Other 8 5 No fork Strong meander 2 4 Delgada (10 to 12 linhas or 22 to 27 mm) Célia Michotey INRA min5 Mean lowest density values min5[Adonis] INRA Individual slope Célia Michotey slope[Adonis] slope TPCa Total protein content per leaf area INRA Célia Michotey TPCa[Adonis] 82 20% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Sacharides_CC Polysacharide cork composition Inês Chaves IBET 80% of the foliage turned color (color range depending) or fell 98 > 95% Full cover 80% of fruits reached maximum size 78_NB[Adonis] Célia Michotey INRA BBCH_78 Prec Average rainfall Célia Michotey INRA INRA Célia Michotey Limonene content Limonene Between 25 and 50% of the area covered 6 Early 1 Few and/or thin branches 1 1 Dry or broken crown 4 Angle greater than 55° attribute 2 4 to 5 cm of diameter at the insertion point 3 Polycyclism on lateral shoots only Moderate damages 2 3 Very strong meander [fork height] Fork still present at the given height mbs Multi strands 1 A few fruits in a small section of the crown Female 2 Most leaf or mixed buds have finished swelling and are ready to burst. For some species the scales may have changed color. 03 Shoots reached 70% of their final size (deducted a posteriori) 37 5 Very visible leaves Male 1 75 to 100% of the leaves have fallen 4 75 % à 90 % du feuillage restant 3 2 A lot of fruits in a small section of the crown 3 1 Less than 15-20 hypertrophied lenticels pBF[Adonis] pBF Célia Michotey Percentage of late wood INRA Célia Michotey INRA BBCH_09 09_NB[Adonis] 50% of buds with leaves coming out Inês Chaves SWC Stem water content IBET Most leaves or mixed buds began to swell 01 1 Fork gone but transformed into a large branch 8 More than 75% of the area covered Shoots reached 20% of their final size (deducted a posteriori) 32 09 At least 50% of the buds have the tips of the first leaves that extend beyond the tip of the scales, which may still be present. The leaves begin to individualize. In pines, the needles begin to pierce the sheath. In other conifers the first buds show individualized needles in closed brush. 5 Big 3 Up to 75% of affected shoots 6 Crown completely green 4 1 Canker is developed along less than 20% of stem circumference 10% of the foliage turned color (color range depending) or fell 91 Célia Michotey/Inês Chaves Leaf water content LWC% LWC[Adonis] INRA/IBET The first fruits reached their usual maximum size, but did not changed color yet 70 Healthy tree 0 0 Alive SPCm[Adonis] Soluble protein content per leaf dry mass Célia Michotey SPCm INRA Mean early wood density INRA Célia Michotey mBI mBI[Adonis] The majority of the flower buds have begun to open 53 4 Beautiful tree, to keep, deserves to be selected 1 to 2 light curves 4 5 Leaves expanding and diverging with their blades sill rolled up, scales may be present or absent 0 no damage 2 3rd quarter (between 23° and 45°) INRA/IBET NID Célia Michotey Nests presence NID[Adonis] 2 Regular N-2WL[Adonis] Lenticels : number of cell with secondary wall deposition Inês Chaves IBET N-2W_lent 45 At least 50% of buds have a juvenile coloration 49 At least 50% of buds are lignified and mature Chalara easy to see 2 50 to 75% of the foliage remaining 3 60% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. 66 9 1 No straight stem (severe) Bud sprouting with tips of the small leaves emerging out of the scales, first green is visible 3 Low heterozygosity 1 120° 1 S50 S50[Adonis] INRA Célia Michotey Slope of the vulnerability curve 4 3 Leaves are fully expanded (early flushing) 3 Large number of merged and uncountable lenticels 3 60° Plagiotropic 0 100% of the foliage remaining, green tree 5 2 10 to 50% of the leaves have fallen 68 80% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. On some branches 1 62_NB[Adonis] INRA Célia Michotey BBCH_62 20% of flowers sexually mature 77 70% of the fruits reached their usual maximum size, but did not changed color yet INRA Célia Michotey NBREC[Adonis] CONREC NBREC Harvest number 0 ? 3 Significant damages At least 50% of the foliar or mixed buds have burst. The green tips or bases of the leaves appear between the scales. In pines, the bud lengthens and the needles remain inside their sheath, which takes on a silvery hue; the green base of the needles can be seen. In other conifers, the needles begin to be visible. 07 39 Shoots reached 90% of their final size (deducted a posteriori) 80 The first fruits of the crown are mature (has changed color or is dried and dehiscent or has fallen) 2 Little early Smooth bark, some cracks 1 Canker is developed along between 40% and 60% of stem circumference 3 12 Broadleaves: the first leaves are spread on about 20% of the crown. Pines: 20% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 20% of buds with open-brushed needles 0 Absence 3 High heterozygosity 2 damage to the n-1 shoot and laterals recovery 3 meia-marca (12 to 14 linhas or 27 to 32 mm) 75 to 90% of the foliage remaining 4 1 Irregular Canker is developed along between 60% and 80% of stem circumference 4 dc Crown dieback Broadleaves: the first leaves of the crown are spread. Pines: first buds very elongated with the first needles coming out of the sheath the sheath glued in pairs. Other conifers: first buds showing open-brushed needles. 10 Medium 3 Dying tree 1 0 No leaves have fallen 1 1 pollarding The first flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. 60 4 Abundant: abundant groups or few groups but with many individuals regularly spread all over the plot 1 Small 3/4 of the total height of the plant dry 3 Bud enlarge and starting to flush, first green is visible at the tip 2 3 76 60% of the fruits reached their usual maximum size, but did not changed color yet 40% of the fruits reached their usual maximum size, but did not changed color yet 74 2 4 Totally dry plant Dormant winter bud 00 0 Straight 4 No fork 1 Healthy The first leaves of the crown have faded or fallen 90 1 Low growth Fork in upper third of the trre 3 8 ? Damaged tree 2 95 50% of the foliage turned color (color range depending) or fell 90% of flowers are sexually mature. Flowers with petals: petals are spread out and stamens release pollen. Male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. 69 1 Absence: no recruit visible 3 Angle between 40 et 55° 19 Broadleaves: the first leaves are spread on about 90% of the crown. Pines: 90% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 90% of buds with open-brushed needles na Missing data 7 Between 50 and 75% of the area covered 3 Crown starts yellowing 3 Acute angle less than 45 ° Doubtful 2 7 Crown dieback 0 Unscathed tree, without damage 1 Light meander At least 10% of buds have the tips of the first leaves that extend beyond the tip of the bud scales 08 Green white bud, beginning of leaves 4 1 Healthy, no sore The needle bundle starts to loosen, shoot are growing 5 None < 5% Fork in lower third of the tree 1 Ramicorn ram 3 Ill 30 Start of shoot growth 0 Tree completely dry, only the main axis remains 3 Bud scales start to burst, first needles visible 2 25 to 50% of the foliage remaining Groups: presence of scattered groups 3 Shoots reached 50% of their final size (deducted a posteriori) 35 2 Abundant Broadleaves: the first leaves are spread on about 30% of the crown. Pines: 30% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. Other conifers: 30% of buds with open-brushed needles 13 Média 5 Uncertain 2 0 No fruits Between 30° and 60° 2 At least 10% of the shoots show signs of growth arrest (appearance of morphological markers) 40 Absolutely straight stem (none) 5 0 Naked tree (completely or with some top marcescent needles) Grossa (> 18 linhas or > 40 mm) 1 mol.m-2.s-1 SI Stomatal index stomatal index leaf Ratio between the number of stomata and the total number of epidermal cells counted on the same unit area quantity Feet quantity foot Assessment of the feet quantity on the tree NBPIED None Measurement preguentas/madeirentas cork preguentas/madeirentas quality Continuity and felicity persistence are two characteristics of the periderm of cork oak that allow the sustained exploitation of cork. However, in some cork oaks sometimes appear in the secondary phloem small peridermal arcs enveloping the sclerites or the outermost blades of the broad phloem rays, and whose new felide ends up joining the anterior path of the felogene. These sclerenchymal formations, isolated from the intercarcass by a normal process of abcision, become sclerenchymal inclusions in the suberous tissue or the felogene surface. These corks have, for these reasons, great hardness, low elasticity and high density elevation Individual elevation Elevation above sea level of the tree level plant elevation quantity Assessment of the quantity of leaves on the tree leaf LV Leaf quantity Capillary electrophoresis Quantification by capillary electrophoresis Carbon isotope (C13) composition in leaves leaf Delta C13 carbon discrimination Delta13C Regeneration scoring scale Epicormic secondary bud quantity Assessment of epicormic secondary buds quantity, a secondary bud having reached the bark as its growth has been delayed for a rather long time secondary epicormic bud SecLBD quantity Measured with a pilodyn with 3 repetitions Pilodyn protocol Competition protocol The distance-dependent competition index is assessed by using the distance and diameter mesures of the 5 nearest neighbors to the target tree. It should also be specified whether they are conspecific or not with the sample tree. monopodic plant monopodic Assessment of monopodic growth. The main or primary axis continues its original line of growth giving off successive axes or lateral branches from the apex of the main meristem. Monopodic growth Suberin Ectadecanedioid content suberin content Suberin Ectadecanedioid content cork Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Ectadecanedioid acid plant neighbors Alive neighboring trees NBVOIS Number of alive neighboring trees for a given tree WF-t fiber thickness Wood fibers thickness wood Wood fibers thickness Content measured by chemical analysis Chemical content protocol Calendar day stem length Stem_L Stem length Stem length STAT plant Tree status Assessment of the tree status status Computation None LW lobe Lobe width width Lobe width Assessment of the date when shoots reached 20% of their final size (deducted a posteriori) BBCH_32 evaluation Budflush BBCH scoring scale Germacrene content molecule content leaf Germacrene content germacrene bud break Budflush date BF_date Assessment of the date when budflush score will be reached for the first time Leaf area protocol Leaf area was determined with a color image analysis system (WinDIAS 2, Delta-T Devices, Cambridge, UK) by scaning individual leaves Total height of the tree, from the ground to the tallest part of the crown height Tree height HT plant EP Assessment of the number of epidermal cells on the adaxial leaf area (upper surface of the leaf) Adaxial epidermal cells epidermal cell leaf plant Plant width at the soil level R Plant width at the soil level in spring width Chlorophyll content was measured twice a week from 6 days before water-logging to 47 days of treatment. Measurements were made on 3 fully developed leaves of the last growth flush before water-logging on each tree, using a chlorophyll content meter (CCM, Opti Science, Tyngsboro, USA). Leaf chlorophyll content protocol Visual scoring Visual assessment with a reference scoring scale LNC Nitrogen content in leaves nitrogen content leaf Leaf nitrogen content Defects are quantified in the two radial surfaces of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to radial surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas are measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects (cork porosity and nail inclusions) were measured separately and the defect areas were expressed as a percentage of the total area of cork under analysis. Cork defects percent - Radial section protocol Net photosynthesis Net photosynthesis net_An Gradians BBCH_53 evaluation Assessment of the date when the majority of the flower buds have begun to open BBCH_60 evaluation Assessment of the date when the first flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. Suberin chemical content protocol Content in suberin measured by chemical analysis Enzymatic activity of Glutamine leaf enzymatic activity Enzymatic activity of Glutamine GS Assessment of the date when the majority of the flower buds began to swell BBCH_51 evaluation N-div_lent cell dividing Dividing lenticel cells Assessment of the number of lenticel cells dividing cork Pollarding scoring scale NBS pruning plant Secateur knocks number Number of secateur knocks when shaping Expert visual assessment for cork belly color Cork plank color protocol Assessment of the date when shoots reached 70% of their final size (deducted a posteriori) BBCH_37 evaluation Mass percentage Day thinning Thinning plant ECL Assessment of the thinning, an operation to remove a number of trees from a plot in favour of those left in place SUR Assessment of the survival state of the tree plant Survival survival Secondary bud quantity secondary bud quantity Assessment of secondary buds quantity. The secondary bud is present next to the primary bud within the compound bud and it is dormant until it is needed by the plant as a back up when the primary bud fails. SecBD Natural regeneration regeneration Abundance of natural regeneration around the tree soil regeneration carboxylation efficiency Inst_Carbon_eff Instantaneous carboxylation efficiency Instantaneous carboxylation efficiency leaf cm3 Shoot dry mass Shoot dry mass dry mass SHDM shoot Heterozygosity population heterozygosity Heterozygosity Assessment of the heterozygosity in the population NBPIEDSUP foot Additional feet quantity Assessment of additional feet quantity for the same tree since last passage Budflush scoring scale sur 8 mmol CO2 m-2 s-1 ppm-1 Suberin Hydroxyalkanoic content cork Suberin Hydroxyalkanoic content Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Hydroxyalkanoic acid suberin content Count CM carbon content leaf Carbon content in leaves Leaf carbon content Internal CO2 concentration Ci leaf Sub-stomatal cavity CO2 concentration measured under light curve CO2 Assessment of the date when shoots reached 10% of their final size (deducted a posteriori) BBCH_31 evaluation Branching scoring scale on 3 Assessment of the date when 20% of the foliage turned color (color range depending) or fell BBCH_92 evaluation Unknown Observation made by X-Ray X-Ray protocol Broadleaves budflush scoring scale BBCH_98 evaluation Assessment of the date when 80% of the foliage turned color (color range depending) or fell plant damages Assessment of drought damages SEC Drought damage Area of the nail inclusions Prego Nail inclusions nail inclusions cork Forking score protocol Visual assessment with a reference scoring scale cork Assessment of the porosity (or empty spaces) in cork. It is a fraction of the volume of pores over the total volume, so between 0 and 1 or as a percentage. porosity Cork Porosity %Pores MFL Mean flush length during the growing season leaf flush length Flush length plant identification Identification ID Identification of the targeted tree (mother tree, replenish …) or the sample collected on the tree Selection scoring scale Number of mature fruits/cones that you are able to count on the tree in 30 seconds from the ground using binoculars Fruits/Cones protocol m leaf Carotenoid content in leaves carotenoide content Leaf carotenoid content CAR KS xylem Xylem hydraulic conductivity hydraulic conductivity Xylem hydraulic conductivity Branching scoring scale on 5 leaf A assimilation Assimilation rate Assimilation rate Assessment of the Larch needles coloration Needles coloration needle AIG color leaf SAR enzymatic activity Specific activity of Rubisco in leaves Specific activity of rubisco in leaves Beta pinene content b.pinene leaf Beta pinene content molecule content PV Percentage venation Percentage venation venation leaf Sampling plant Individuals sampling for a specific study ECH selection µmol CO2 m-2 s-1 BBCH_08 evaluation Assessment of the date when at least 10% of buds have the tips of the first leaves that extend beyond the tip of the bud scales CCM (arbitrary units of chlorophyll content meter) Defects are quantified in the two radial surfaces of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to radial surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas are measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects were measured separately: cork porosity and nail inclusions. Cork defects - Radial section protocol % leaf Chlorophyll a to b ratio chlorophyll content Chl a/b Ratio between chlorophyll a and b content in leaf green tissue Ratio Length of the maximum extension of canopy branches from one end to the other (crown diameter) canopy_projection diameter crown Canopy projection Bark thickness protocol Measured randomly at 130 cm from ground level (approximately breast height) using either a small calliper or ruler (if the bark can be detached without damage for the tree) or with specifically designed bark gauges. None Wood infradensity protocol Suberin Glycerol content Suberin Glycerol content cork Cork chemical composition in suberin monomers (Glycerol and phenolics): Glycerol suberin content Index Resprout quantity Assessment of the quantity of resprouts or shoots more than 30cm-long after coppicing shoot quantity Shoots cork Suberin Alkanols content Suberin Alkanols content suberin content Cork chemical composition in suberin monomores (long-chain mono-functional monomers): Alkanols Year Water content protocol Water content (WC) measurements were performed according to Levitt, 1980. FW: Fresh weight of plant material was determined at the end of the experiment (day 35). DW: Dry weight (g) was determined after drying plant material at 70°C (until a constant weight was achieved). dm Thinning scoring scale Slenderness slenderness plant C_El Slenderness of the tree, calculated by dividing its total height by its diameter BBCH_77 evaluation Assessment of the date when 70% of the fruits reached their usual maximum size, but did not changed color yet mm Chalara scoring scale on 3 Assessment of the number of lenticel cells lygnifying cell lygnifying cork Lygnifying lenticel cells N-Lygn_lent Calculation of the mean of the 5 minimal values measured or computed Minimal mean value Polycyclism scoring scale TE survival bud Assessment of the survival state of the terminal bud, the bud at the tip of the stem Terminal bud status WAP-h Wood axial parenchyma high Wood axial parenchyma high high axial parenchyma appearance ANVERE Year of appearance of the reference verticula branch Reference whorl mg/g External hypertrophied lenticels diameter EHLD External hypertrophied lenticels diameter diameter lenticel Delta cadidene content d.cadidene molecule content leaf Delta cadidene content Geotropism scoring scale Cork ring width protocol None leaf staining ST Leaf staining Leaf staining Visual assessment on the first 15 m of the tree height (the crown is not taken into account) with a reference scoring scale. In case of forked stems, only the trunk below the deepest forking point is evaluated. Observations should ideally be done in winter time as visibility is better without leaves. Flexuosity protocol Assessment of the date when the first leaves of the crown have faded or fallen BBCH_90 evaluation Leaf area consumed by chrysomela (phytophagous insect) consumed area leaf Chrysomela leaf consumed area Chrysomela BarkT Asessment of the thickness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark Bark thickness bark thickness GEL Frost damage Assessment of frost damages damages plant discontinuities Cork discontinuities Sharp furrows, oriented longitudinally on the coast of the planks, and may cause discontinuities in the first layers of cork that were produced enguy cork plant flexuosity FLX Assessment of the flexuosity of the tree Tree flexuosity Calliper 130cm protocol Measured at 130 cm from the ground (approximately breast height) with a calliper graduated in millimeters. If the tree has more than one trunk all of them have to be measured and the average has to be recorded (note that tree is multitrunk in comments). BBCH_99 evaluation Assessment of the date when 90% of the foliage turned color (color range depending) or fell Petiol ratio protocol None selection Phenotypic note Assessment of the phenotypic value of the tree for selection SEL plant kg/m3 Allelic richness scoring scale Syllep Sylleptic shoots quantity Assessment of the sylleptic branches quantity, a shoot that develops from a lateral bud with any period of dormancy on the main shoot sylleptic shoot quantity Water use efficiency, the ratio of water used in plant metabolism to water lost by the plant through transpiration leaf water use Wi Water use efficiency Assessed by the average of 3 rounds of counting of fruits/cones Fruits/Cones mean Penetration opposition pilodyn stem Assessment of wood hardness by testing its resistance to pilodyn penetration PIL LCC Leaf chlorophyll content leaf chlorophyll content Chlorophyll content in leaves Diameter of the tree main stem D Stem diameter stem diameter Survival scoring scale 2 Visual count Visual count Numerical unknown - 3 decimals Defects are quantified in the two tangential of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to Tangential surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas were measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects were measured separately: cork porosity and nail inclusions. Cork defects - Tangential section protocol leaf Gamma cadidene content molecule content Gamma cadidene content g.cadidene sequential branch sequential branch SeqBC Sequential branches quantity Assessment of sequential branches quantity, shoots produced throughout tree development within a short time period after the bearer growth unit has formed Cobrilha status quality cork Cobrilha The larva of the coriander (Coroebus undatus) that digs galleries in the nest near the felogene Measured using a hammer and a sharp stick/pike (usually used for concrete), till 60 cm whenever possible, in a randomly chosen spot within the 10x10 m virtual plot around the tree. Make sure that you do not confuse a medium sized rock with the bedrock. Spike protocol Maximal value The maximum value of a list of measured or computed values Assessment of shoots growth Shoot growth shoot DEV growth LDR Lobe depth ratio Lobe depth ratio depth lobe Assessment of the date when at least 50% of buds are lignified and mature BBCH_49 evaluation None Debarking protocol Phenols_CC Chemical composition in polyphenols cork Polyphenols composition polyphenols Hypertophied lenticels scoring scale oxygen content Dissolved oxygen content leaf DOC Dissolved oxygen content in leaves Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 60% of the crown. For pines: 60% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 60% of buds with open-brushed needles. BBCH_16 evaluation None Pore area protocol None het5 Leaf gas exchange was assessed with a portable infrared gas analyzer (LI-6400; LI-COR Inc., Lincoln, USA) equipped with a fluorometer (LI-6400-40, LI-COR Inc., Lincoln, USA). Data was periodically collected from the youngest fully expanded leaf (5–9 h after photoperiod initiation), never extending a total period of 90 min. Block temperature was set at 28 ◦C, light intensity was set at 300 µmol photons m−2 s−1 and CO2 concentration was kept at 400 ppm with an air flow rate of 500 µmol s−1. Fs and Fm’ represent the steady state and maximum fluorescence measured under light adapted conditions. PhiPS2 protocol Forking scoring scale on 4 chlorophyll content leaf Chlorophyll b Chl b Chlorophyll b content in leaf green tissue Diameter of the main stem measured at or within a specified distance from the collar, the part making the transition between the top of the root system and the base of the aerial part. Collar diameter protocol Measured at 1m from the ground with a graduated ribbon Ribbon 1m protocol µmol electron m-2 s-1 Protein content in leaves protein content TPC leaf Leaf protein content Growth scoring scale high Wood radial parenchyma high radial parenchyma Wood radial parenchyma high WRP-h Estimated in the 10x10 m virtual plot around the tree with a predefined scoring scale Virtual plot protocol Assessment of the date when 10% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_61 evaluation cork Circular discontinuities will have roundness about 1. When the pore is less circular the roundness value will be higher. Pores Roundness Pores roundness pore roundness To boil the cork, the 30×30 cm samples are submerged in water at approximately 90°C for 1 h. During the drying period of 72 h cork is kept protected from direct light. The marked positions are then measured for comparison with data obtained before boiling. Cork thickness after boiling protocol uredinia Assessment of uredinia, a reddish pustule that occurs on the leaves of a plant infected with rust fungus number Uredinia Number UN Defoliation scoring scale on 3 Assessment of the date when 80% of the fruits reached their usual maximum size, but did not changed color yet BBCH_78 evaluation g/100g Chlorophyll a to b ratio Chlorophyll ratio protocol Forking scoring scale on 5 Marcescence scoring scale on 3 Presence/Absence Visual appreciation at the inoculation point with a reference scoring scale. Most protocol are using 2 or 3 inoculation points per tree. Canker girdling index protocol precipitation population Prec Rainfall Rainfall on the site of the population Sabinene content leaf molecule content Sabinene content sabinene Assessment of the date when 80% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_68 evaluation Measured with spectrophotometer Beckman DU 640 and reported to leaf area Computation per leaf area Yes/No Tree circumference circumference stem CIR Circumference of the tree main stem cellulose content WCC Cork chemical composition in cellulose wood Cellulose wood composition inclination Mean inclination angle per log of the sequential branches Sequential branches angle aSeqBC branch stone content Stone content in the soil around the tree Soil stone content stone_content soil allelic richness population AR Allelic richness Assesment of the allelic richness of the population by estimation of the mean allelic number by locus in the population Unknown Unknown Primary branching quantity nP Assessment of primary branching quantity primary branching quantity mg/cm2 Hypertrophied lenticels quantity lenticel Assessment of hypertrophied lenticels quantity, a loose aggregation of cells which penetrates the surface of a woody plant and through which gases are exchanged between the atmosphere and the underlying tissues THL quantity Cork chemical composition in suberin monomers (Glycerol and phenolics): Tyramine cork suberin content Suberin Tyramine content Suberin Tyramine content Lamina length lamina length LL Lamina length Wood vessels diameter wood vessel diameter WV-d Wood vessels diameter Assessment of the competition situation at the tree level Competition index competition index plant NCI Survival scoring scale wood ring width Tree ring width TRW Growth rings, also referred to as tree rings or annual rings, can be seen in a horizontal cross section cut through the trunk of a tree Petiole length length Petiole length petiol PL WHC Hemicellulose wood composition wood Hemicellulose wood composition hemicellulose content cm Wood width W-w Wood width wood width Ribbon 130cm protocol Measured at 130cm from the ground (approximately breast height) with a graduated ribbon cork Suberin Ferulic content Suberin Ferulic content Cork chemical composition in suberin monomers (Glycerol and phenolics): Ferulic acid suberin content Leaf surface protocol None Visual assessment on the terminal bud or on the whole tree when terminal bud is not visible with a reference scoring scale Budflush scoring protocol Sylleptic shoot protocol Number of sylleptic branches more than 10 cm-long are counted at the end of the growing season Leaf gas exchange was assessed with a portable infrared gas analyzer (LI-6400; LI-COR Inc., Lincoln, USA) equipped with a fluorometer (LI-6400-40, LI-COR Inc., Lincoln, USA). Data was periodically collected from the youngest fully expanded leaf (5–9 h after photoperiod initiation), never extending a total period of 90 min. Block temperature was set at 28°C, light intensity was set at 300 µmol photons m−2 s−1 and CO2 concentration was kept at 400 ppm with an air flow rate of 500 µmol s−1. Leaf gas exchange protocol at 300 µmol photons m−2 s−1 Suberin Dihydroxyoctadenedioic acid content Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Dihydroxyoctadenedioic acid suberin content Suberin Dihydroxyoctadenedioic acid content cork Branching degree RAM branching Branching degree plant None Obversity protocol Assessment of the quantity of leaf intercalary veins quantity Intercalary veins quantity leaf vein NV cork Measure of the Caliber in linhas (1 linha = 2,256 mm). The cork plank can be divided in 2 major classes regarding the thickness: Delgada (thin) (6 to 8 linhas or 14 to 27 mm) and Rolhável (stoperble) (12 to > 18 linhas or 27 to > 40 mm). Cal thickness Caliber Latewood density Assessment of latewood density, the harder and less porous portion of an annual ring of wood that develops late in the growing season BF latewood wood canker Canker quantity Assessment of canker quantity Canker quantity wood Wood Carbon content Carbon content in wood C carbon content Senescence scoring scale Notation of the number of days until the observed stage is reached for the first time Day number protocol Cover scoring scale None NF Assessment of flushes during the growing season plant flush Flush eels cork Cork Eelness Sulcos pronunciados, orientados longitudinalmente na costa das dapranchas, podendo causar descontinuidades nas primeiras camadas de cortiça que foram produzidas Leaf dry mass biomass leaf LDM Weight of the dry leaf Uredinia Size scoring scale Assessment of the basal curve Basal sweep stem CB basal curve Biomass protocol Measured by leaves weighing Debarking scoring scale lamina Assessment of the lamina pubescence, the fact of having fine hairs more or less spaced on the leaf blade HR Lamina pubescence pubescence BBCH_84 evaluation Assessment of the date when 40% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Computation per gram of nitrogen None leaf C/N C/N Ratio of the mass of carbon to the mass of nitrogen in leaves. It can, amongst other things, be used in analysing sediments and compost. carbon-to-nitrogen ratio Assessment of the date when 90% of the fruits reached their usual maximum size, but did not changed color yet BBCH_79 evaluation Assessment of the drying up level of the stem Stem drying up drying up plant DES Assessment of the date when budset score will be reached for the first time budset bud BS_date Budset date Budburst scoring scale Visual assessment of the branches angle with a reference scoring scale, on a minimum of two to three successive whorls and discarding the last two whorls. Branches angle protocol 1 None None µm Leaf_CO2_curve Leaf CO2 light response curve Leaf CO2 light response curve soil Individual aspect azimuth The direction (azimuth) that the slope faces at the location of the tree azimuth Fixation index Assessment of the panmixia (or panmicticism) standard deviation. It is the ability of individuals in a population to interbreed without restrictions; individuals are able to move about freely within their habitat, possibly over a range of hundreds to thousands of miles, and thus breed with other members of the population population Fis panmixia Tolerance protocol Coefficient calculated for each untreated plant by comparing the values of a growth (HT, CIR or Vol) with the average values of the same for plants of the same genotype in treated situation Maximal mean value Calculation of the mean of the 5 maximal values measured or computed Wood fibers lengh WF-l fiber lengh Wood fibers lengh wood Damage scoring scale break BF_score Budflush bud Assessment of the bud break level Assessment of the date when 20% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_62 evaluation BBCH_85 evaluation Assessment of the date when 50% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Visual scoring BBCH Visual assessment with the BBCH reference scoring scale Assessment of the date when 90% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) BBCH_89 evaluation plant CHAL Chalara chalara Assessment of the tree condition in the face of a chalara attack, a disease in ash trees characterised by leaf loss and crown dieback and caused by the fungus Chalara fraxinea Fructification BBCH scoring scale Girdling index SWA Amount of water present in the soil soil water availability Soil water availability Beta caryophyllene content leaf molecule content b.caryophyllene Beta caryophyllene content Starting at the tree, one member of the field team walks 5 meters down and another walks 5 meters upslope. The measure is done using a clinometer and looking at the other´s eyes. Slope protocol BBCH_07 evaluation Assessment of the date when at least 50% of the foliar or mixed buds have burst. The green tips or bases of the leaves appear between the scales. In pines, the bud lengthens and the needles remain inside their sheath, which takes on a silvery hue; the green base of the needles can be seen. In other conifers, the needles begin to be visible. cm-2 Rust scoring scale plant geotropism Plagiotropy Observation of the tree growth orientation compared to the soil, imposed by gravity (geotropism). It is plagiotropic if the axis of growth is horizontal and orthotropic if the axis of growth is vertical. PLAG Lobe depth protocol None Suberin Enedioic content Suberin Enedioic content cork Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Enedioic acid suberin content Aspect protocol The aspect/direction (azimuth) is measured by compass (5 degree steps) in the direction of the steepest slope S/G Ratio between Syringyl (S) and Guaiacyl (G) contents Syringaldehyde/Coniferaldehyde contents molecule content wood biomass Weight of the dry root root RDM Root dry mass Pore roundness protocol None Status scoring scale mm2 Cork thickness before boiling protocol Corks thickness is measured in eight positions: two in each radial surface and two others in each transversal face. The measured positions are marked for comparison with data obtained after boiling. xylem P50 Xylem pressure presure Xylem pressure flower Blossoming Assessment of the blossoming (male and/or female) level FLO blossoming Cork plank color scoring scale Frost damages scoring scale Lobe quantity Assessment of the quantity of lobes on the lamina quantity lobe NL BBCH_83 evaluation Assessment of the date when 30% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) None Stable isotope analysis BBCH_13 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 30% of the crown. For pines: 30% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 30% of buds with open-brushed needles. Assessment of the date when 10% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) BBCH_81 evaluation Branches angle scoring scale on 5 growth AC Assessment of the stop of shoots growth shoot Growth stop Bark roughness roughness BarkR bark Assessment of the roughness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark The minimum value of a list of measured meteo values Minimal meteo value BBCH_82 evaluation Assessment of the date when 20% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) Stem length protocol Measured from soil to basis of the apical meristem or bud (depending of time in season) ring surface surf Ring surface Surface of the rings, the layer of wood produced by a single years growth of a woody plant wood RQ Leaf rubisco content Rubisco content in leaves leaf rubisco content Plant and rock covers are assessed independently in the 10x10 m virtual plot around the tree and with a predefined scoring scale. As the estimations are independent, the total of the two can be > 100% (some plants can grow over rocks). Independant cover protocol BBCH_65 evaluation Assessment of the date when 50% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. Assessment of the date when at least 10% of the shoots show signs of growth arrest (appearance of morphological markers) BBCH_40 evaluation Defects are quantified in the two tangential of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to Tangential surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas were measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects (cork porosity and nail inclusions) were measured separately and the defect areas were expressed as a percentage of the total area of cork under analysis. Cork defects percent - Tangential section protocol BBCH_18 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 80% of the crown. For pines: 80% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 80% of buds with open-brushed needles. Branching density plant BRA Assessment of the tree branches density branch Enzymatic activity of hydroxypyruvate reductase Enzymatic activity of hydroxypyruvate reductase enzymatic activity HPR leaf Abundance scoring scale Increase protocol Calculation of the difference between 2 measured values of the same morphological observation (ex: circunference, height) at different times to evaluate the tree growth Camphene content Camphene content camphene leaf molecule content BBCH_14 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 40% of the crown. For pines: 40% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 40% of buds with open-brushed needles. Assessment of the date when at least 50% of the buds have the tips of the first leaves that extend beyond the tip of the scales, which may still be present. The leaves begin to individualize. In pines, the needles begin to pierce the sheath. In other conifers the first buds show individualized needles in closed brush. BBCH_09 evaluation Assessment of the date when shoots reached 50% of their final size (deducted a posteriori) BBCH_35 evaluation Numerical unknown cork WC% Compression wood quality Compression wood, reaction wood formed on the lower sides of branches and leaning trunks and characterized by darker color, glassy appearance, relatively wide and eccentric annual rings, shorter vascular elements, and excessive and uneven shrinkage Fructification fruit FRUC fructification Assessment of the fructification Soil water availability Soil was spread in a fine layer and air-dried in the glasshouse until a constant weight was achieved. Minimum pot weight was considered to be pot’s weight containing a totally dry soil mixture. Maximum pot weight was measured when soil was at field capacity (FC) density Wood density, or the dry weight per unit volume of wood WD wood Wood density BBCH_11 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 10% of the crown. For pines: 10% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 10% of buds with open-brushed needles. cell wall thickness WV-CW-t wood vessel Wood vessels cell wall thickness Wood vessels cell wall thickness Distance between the sampled tree and its closest neighbors neighbor distance Distance individual/neighbor distance plant nest quantity Assessment of the quantity of nests on the tree NID Nests quantity µmol CO2 / mmol H2O Assessment of the date when 40% of the foliage turned color (color range depending) or fell BBCH_94 evaluation saccharose content Leaf saccharose content leaf Saccharose content in leaves SACL Latent period protocol Duration in half-day scale between date of inoculation and first sporulating uredia. lesion Canker_G stem Lateral extent of a canker lesion, an area of dead tissue which grow slowly and is caused by bacteria or fungus Canker girdling Degree Terrentas/Barrentas A loose, pulverulent tissue with rounded cells that leave empty spaces between them, whose walls do not always overlap, filling the lenticular channels. It occurs mainly in corks with a special type of porosity in which the pores have a longitudinally conical profile. When this defect manifests itself frequently, the cork is called terrenta or muddy, and in the most severe cases it disables the production of natural cork works. Cork Quality Terrentas/Barrentas cork quality Assessment of the date when at least 50% of buds have a juvenile coloration BBCH_45 evaluation COMP competition plant Appreciation of the space available for the tree to grow Competition Budset scoring scale pore frequency Pores frequency Pores Frequency cork Number of pores in frame area Alpha copaene content Alpha copaene content leaf a.copaene molecule content Formiga quality cork Formiga status The ant (Cremastogaster scutellaris) that opens wide and sinuous galleries in the suberous tissue Defects scoring scale leaf Specific leaf area specific area Leaf area per unit of leaf dry mass SLA Leaf relative water content protocol Leaf relative water content was determine at maximum stress (day 28) and at the end of the experiment (day 35). Six leaf discs (Ø = 19 mm) were collected for each plant from the three youngest expanded leaves (2 discs per leaf). Five plants were analysed per treatment. suberin content Suberin Hydroxyoctadecanoid content Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Hydroxyoctadecanoid acid Suberin Hydroxyoctadecanoid content cork Rachis quantity RACH rachis quantity Assessment of rachis quantity, the main stem of a compound leaf bearing each leaflet of the blade Wood fiber protocol None Comments plant COM observation Observations on the tree, unsystematic and somewhat anecdotal cm2 Canker lesion length protocol Measured in millimeters with a measuring tape at the inoculation point. Most protocol are using 2 or 3 inoculation points per tree. Ring width protocol None leaf LC color Leaf color Leaf color in autumn Assessment of epicormic branches quantity, shoots growing from a dormant bud lying underneath the bark of an old structure EpiBC epicormic branch quantity Epicormic branches quantity Petiole ratio PR petiol Petiole ratio armillaria Armillaria Assessment of armillaria (parasitic fungi) at the base of the tree ARM plant BBCH_93 evaluation Assessment of the date when 30% of the foliage turned color (color range depending) or fell plant Sample(s) collected on the tree REC sampling Harvest Assessment of the shape of the tree plant FOR Tree shape shape Cork plank uniformity protocol Expert visual assessment for cork inner surface uniformity lamina Shape of the lamina shape BS Lamina shape Lenticel cell with secondary wall deposition cell with secondary wall deposition Assessment of the number of lenticels cells with secondary wall deposition N-2W_lent cork Crown chalara scoring scale Basal sweep protocol Visual assessment with a reference scoring scale WID Wood density, or the dry weight per unit volume of wood infradensity wood Wood infradensity Identifier Mf is the fresh mass, Mt is the turgid mass after rehydrating the leaves and Md is the dry mass after drying the leaves in an oven.  Leaf water content protocol Defects are quantified in the two transversal of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to transversal surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas were measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects (cork porosity and nail inclusions) were measured separately and the defect areas were expressed as a percentage of the total area of cork under analysis. Cork defects percent - Transversal section protocol petiol PETIOL leaf Petiols without leaves Assessment of petiols without leaves Assessment of the date when 30% of the fruits reached their usual maximum size, but did not changed color yet BBCH_73 evaluation Bark roughness scoring scale BBCH_76 evaluation Assessment of the date when 60% of the fruits reached their usual maximum size, but did not changed color yet Visual assessment with a reference scoring scale for cork industrial quality Cork industrial quality protocols Number Regularity scoring scale Branch diameter scoring scale vpm [C02] Wood density protocol Wood density at 12% moisture content Canopy projection protocol Measured on the maximum extension of canopy branches along an axis of the crown, from one edge to the opposite edge BBCH_50 evaluation Assessment of the date when all flower bud are dormants Forking stem ANFO Notation of the fork appearance fork Ratio between epicormic branches and epicormics Ratio epicormic branches/epicormics epicormic branche epicormic rEpiBC Measurement made at the base of the tree, at the collar Collar protocol Degree celsius Assessment of the date when 30% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_63 evaluation nitrogen/carbon Ratio leaf nitrogen to leaf carbon Ratio leaf nitrogen to leaf carbon leaf LN/LC Mean value Calculation of the mean of a series of measured or computed values Leaf perimeter LP leaf perimeter Leaf perimeter quality Tension wood Tension wood, reaction wood formed on the upper side of tree branches and leaning trunks and characterized by narrower and thinner walled wood and fiber elements, excessive longitudinal shrinkage, and tendency to collapse on drying cork WT% Marcescence scoring scale on 6 Pores Area pore area cork Area of the circular discontinuities of the cork plank Pores area Quenching protocol None Intra-ring variance Intra-ring variance ring varintracerne wood Chalara scoring scale on 5 BBCH_96 evaluation Assessment of the date when 60% of the foliage turned color (color range depending) or fell leaf TPgC Pigments content in leaves pigment content Leaf pigments content GRA Assessment of seeds quantity quantity seed Seeds quantity Dry weight (g) was determined after drying plant material at 70 ◦C (until a constant weight was achieved) Dry weight protocol Lenticels protocol None Height of trunk below the first branches of the canopy height HTrunk stem Height trunk Gs leaf Transpiration rate Transpiration rate transpiration Fork quantity Assessment of forks quantity, appearance of sequential branches with an inclination angle greater than 45° fork FO quantity Detailed survival scoring scale Branch height branch HB Height of the branch height Budflush conifers apical bud scoring scale Repetitions protocol Number of replicates used to calculate the mean value of the associated trait TDM Dry matter biomass plant Weight of the plant dry matter lamina WP width Largest width of the lamina Lamina largest width Measured from soil to basis of the apical meristem or bud (depending of time in season) with a pole or a clinometer Plant height protocol nkat/mg Enzymatic activity of glycolate oxydase leaf Enzymatic activity of glycolate oxydase GO enzymatic activity temperature Temperature on the site of the population Temperature Temp population Wood width protocol None Fructification scoring scale SWC Stem water content stem Amount of water in the stem water content Assessment of the date when 90% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_69 evaluation plant GR Assessment of the growth of the tree Tree growth growth Growth BBCH scoring scale BBCH_34 evaluation Assessment of the date when shoots reached 40% of their final size (deducted a posteriori) Branches angle scoring scale on 4 Epicormic percentage protocol None Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 50% of the crown. For pines: 50% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 50% of buds with open-brushed needles. BBCH_15 evaluation Image acquisition of the two radial, two transversal and one tangential sections made through scanning at a minimum resolution of 300 dpi. Images uploaded and then analysed using ImageProPlus1 (Media Cybernetics, USA) image-processing software. Pore frequency protocol method_of cover Vegetation/Rock cover cover soil Estimatation of the amount of vegetation or rock cover on the ground around the tree Count of uredia formed 14 days after inoculation. Uredia number protocol Circumference increase by the growth of the tree main stem Circumference increment stem ICIR circumference leaf Alpha pinene content molecule content Alpha pinene content a.pinene Leaf gas exchange light response curve protocol Leaf gas exchange was assessed with a portable infrared gas analyzer (LI-6400; LI-COR Inc., Lincoln, USA) equipped with a fluorometer (LI-6400-40, LI-COR Inc., Lincoln, USA). Light response curves were performed 5–11 h after photoperiod initiation, using fully expanded leaves of 71 days-old plants under good illumination. A 28°C block temperature was used, with CO2 concentration at 400 ppm and an air flow rate of 500 umol s−1. Photosynthetic photon flux density (PPFD) was gradually decreased from 2000 to 0 (2000; 1750; 1500; 1200; 900; 700; 500; 250; 100; 70; 50 and 0 µmol photon m−2 s−1). A 2–3 min acclimation period was performed between the measurements of the 12 light levels. Footprint or plan area of the crown of a tree expressed as crown width crown crown_size Crown size spread soil_depth Soil depth depth Soil depth around the tree soil leaf An/Ci The initial slope provides an in vivo measure of the activity of Rubisco in the leaf. This is sometimes called the mesophyll conductance. carboxylation efficiency Carboxylation efficiency Leaf area LA area Total area of the leaf leaf Chlorophyll protocol Chlorophyll measurement: Absorbance was measured with a spectrophotometer (DU-70 Spectrophotometer, Beckman, USA) at 663.2 and 646.8 nm in a quartz cuvette. A646.8 is the absorbance at 646.8 nm and A663.2 is the absorbance at 663.2 nm, v is volume (ml), DW is dry weight. Number/area parts per million (ppm) Bark thickness mean Assessed by the average of 5 random measurements of bark thickness à 130 cm. Epicormic primary bud quantity primary epicormic bud quantity PriLBD Assessment of epicormic primary buds quantity, a primary having reached the bark as its growth has been delayed for a rather long time Abundance in crown scoring scale Transfer of electrons during photosynthesis in light saturated leaf leaf Leaf electron transport rate ETR electron transport Volume Volume of hardwood, the wooded part of a tree (trunk and branches) with a diameter at the smallest end greater than 7 cm (most often corresponding to the maximum cutting of wood made by forest operators) Vol volume Eelness scoring score Content ratio measured by chemical analysis Chemical content ratio protocol Assessment of the sequential branches volume quantity vSeqBC Sequential branches volume sequential branch Assessment of the date when 40% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_64 evaluation Assessment of primary buds quantity. The primary bud is the first to grow after the winter dormant period and is the most likely to develop a robust shoot during the growing season. Primary bud quantity quantity primary bud PriBD Leaf mass/area protocol The leaves were sampled after 50 days of water-logging plant Sympodial growth sympodic Assessment of sympodic growth. The apparent main axis is not developed from a terminal bud but transferred to a lateral meristem made up of successive secondary axes each of which represents one fork of a dichotomy, the other being of weaker growth or suppressed entirely. sympodic Limonene leaf Limonene content molecule content Limonene content Counting made with X-Ray X-Ray counting protocol mm - no decimal plant Rust rust ROU Assessment of rust, a plant disease caused by pathogenic fungi of the order Pucciniales (previously also known as Uredinales) Chalara influence on leaves Assessment of the influence of chalara on the leaves number leaf CHAL_nbF chalara g/m2 Wood radial parenchyma thickness radial parenchyma WRP-t Wood radial parenchyma thickness thickness Root water content Amount of water in roots root RWC water content gW stomatal conductance Stomatal conductance to water vapour leaf Stomatal conductance, the rate of passage of water vapor exiting through the stomata of a leaf marcescence Assessment of the marcescence, the retention of dead plant organs that normally are shed such as the withering of leaves without falling off Marcescence MAR plant Number of replicates used to calculate mean value of an associated REP plant Number of repetitions replicate BRR Assessment of straightened branch Straightened branch branch straightening Coefficient of the budflush precocity BF_prec bud break Budflush precocity bud Ability to vegetative propagation AVP Assessment of the ability to vegetative propagation, any form of asexual reproduction occurring in plants in which a new plant grows from a fragment of the parent plant or a specialized reproductive structure Counted on a fixed leaf area of 0.182 mm² Leaf area counting protocol Standard method for gas exchange and fluorescence measurements. PPFD is the photon flux density of photosynthetically active radiation (400–700 nm), 0.84 is the assumed light absorbance of the sample, and 0.5 is the fraction of excitation energy diverted to the photosystem II ETR protocol angle Assessment of the branches angle branch Branch angle ANG DHL Maximum colour level of visible hypertrophied lenticels Maximum colour level of visible hypertrophied lenticels color lenticel Lobe ratio protocol None Measurements based on the coupling of catalyzed oxidation reactions of the same compound, NADH. NADH protocol Assessment of the plant defects Plant defects defects plant DEF Shoot diameter protocol Measured below the terminal bud Withered leaves WI Assessment of the survival state of leaves survival leaf stem biomass Weight of the dry stem Stem dry mass SDM suberin content Total cork chemical composition in suberin monomores Total suberin content cork Total suberin content leaf photosynthetic rate An Photosynthetic rate The total amount of carbon fixed by the plant per unit time. Measured by determining the changes in CO2 concentration over a plant leaf in a glass enclosure. Assessment of forks position on the tree FO_score forks position Forking score plant pé de linha Measured in linhas (1 linha = 2,256 mm) with a kind of ruler called pé de linha DF defoliation Assessment of the tree defoliation Defoliation plant None Cork discontinuities protocol Cork plant thickness ESP cork Cork plank thickness thickness BBCH_87 evaluation Assessment of the date when 70% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) SW sinus Width of the leaf sinus, the space or indentation between two lobes or teeth of a leaf width Sinus width leaf STOM Stomatal density stomatal density Assessment of the number of stomata, the stomata controling the movement of gases in and out of a leaf, making carbon dioxide available for photosynthesis and controlling the loss of water from the leaf through transpiration pore lenght Pores Length cork Lenght of the circular discontinuities of the cork plank Pore lenght cork age scoring scale Assessment of the date when the first fruits reached their usual maximum size, but did not changed color yet BBCH_70 evaluation branch diameter Shoot diameter RD Shoot diameter ‰ Shoot to Root dry weight ratio biomass Shoot/Root dry mass S/RDM shoot/root Assessment of debarkings quantity debarking Debarkings quantity N-debark cork Branch diameter branch Assessment of the diameter of the branch diameter DB Epinasty protocol The occurrence of leaf epinasty was recorded using three ordinals classes: above perpendicular, perpendicular to stem axis and less then perpendicular, and three numerical values were assigned for these classes: 120°, 90° and 60° wood Ratio between Hydroxyphenyl (H) Syringyl (S) and Guaiacyl (G) contents Hydroxyphenylaldehyde/Syringaldehyde/Coniferaldehyde contents H/S/G molecule content Non-photochemical quenching leaf NPQ Non-photochemical quenching quenching branch Branching habit Branching habit BRAH BBCH_91 evaluation Assessment of the date when 10% of the foliage turned color (color range depending) or fell Wood vessel protocol None BBCH_38 evaluation Assessment of the date when shoots reached 80% of their final size (deducted a posteriori) Assessment of the polycyclism nature, the ability for a plant to produce several flushes in the same growing season Polycyclism nature POLY plant polycyclism Branches angle scoring scale on 3 quantity Number of individuals NbI plant Number of individuals in the population bud Terminal bud diameter TBD diameter Diameter of terminal bud Annual increment of cork rings thickness cork Cork annual growth Cork AG growth Assessment of the date when 60% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) BBCH_86 evaluation Suberin Oleic content suberin content Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Oleic acide cork Suberin Oleic content Bud date protocol Estimated date from polynomial regression of a time series of budflush or budset scores Recording of an accident on the terminal bud Terminal bud accident accident NAAT bud Visual assessment Visual assessment Leaf mass per leaf area mass/area Leaf mass per leaf area LMA leaf The mean value of a list of measured meteo values Average meteo value BBCH_19 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 90% of the crown. For pines: 90% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 90% of buds with open-brushed needles. PhiPS2 leaf photosystem II Leaf quantum yield of photosystem II Quantum yield of electron transfer at PSII None Nail size protocol S50 Slope of the vulnerability curve vulnerability curve Slope of the vulnerability curve slope leaf Alpha cubebene content a.cubebene molecule content Alpha cubebene content Flexuosity scoring scale on 3 Branches angle scoring scale on 3b Colorimetric determination Colorimetric protocol B ring Ring density Assessment of ring density, the layer of wood produced by a single years growth of a woody plant wood cm2/g Visual assessment with a reference scoring scale Branches angle protocol 2 None Wood parenchyma protocol Drying up scoring scale observation Name of the file or archive where photo(s) of the tree can be found plant photo Photo Nitrogen isotope (N15) composition in leaves nitrogen discrimination Delta15N Delta 15N leaf Assessment of epinasty, a nastic movement in which a plant part (such as a leaf) is bent outward and often downward leaf Epinasty EPI epinasty fork Insertion height of the fork height HFO Height fork shoot Total length of the shoot Shoot length length LPOUS Assessment of the date when shoots reached 60% of their final size (deducted a posteriori) BBCH_36 evaluation BBCH_10 evaluation Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves of the crown are spread. For pines: first buds very elongated with the first needles coming out of the sheath the sheath glued in pairs. For other conifers: first buds showing open-brushed needles. Heterozygosity scoring scale fructification Regularity of the fructification FRUC_REG plant Fructification regularity NBUC growth unit Growth unit quantity Assessment of growth units quantity quantity mg/L LD plant Latent Period Latency measured against a given rust strain latency Assessment of the date when 50% of the foliage turned color (color range depending) or fell BBCH_95 evaluation linha mg/g DW Measured with spectrophotometer Beckman DU 640 and reported to leaf dry mass Computation per leaf dry mass plant SUR Assessment of the health status related to red band disease survival Health status red strip BioF Foliar biomass, the mass of biodegradable living matter of the crown plant foliar biomass Foliar biomass Deviation from verticality plant Measurement of the deviation from the verticality deviation verticality VER Assessment of the of lenticel cells alongating and expanding N-A&E_lent cork cells alongating/expanding Growing lenticel cells Leaf area measurement protocol Measured on a fixed leaf area of 0.182 mm² Assessment of the senescence, the growth phase in a plant or plant part (such as a leaf) from full maturity to death senescence plant Senescence SEN Harvest protocol Visual assessment collection Mean wood density Calculation of the mean ring, latewood or earlywood density weighted by the ring surface Curves scoring scale on 5 H hydrogen content wood Hydrogen content in wood Wood Hydrogen Epinasty scoring scale Cork plank uniformity protocol dieback Assessment of crown dieback, a condition in woody plants in which peripheral parts of the crown are killed DC crown Crown dieback Uredinia Size uredinia size US Size of uredinia, a reddish pustule that occurs on the leaves of a plant infected with rust fungus BR Inner plank surface relief relief cork Flatness uniformity of the inner plank surface QUAL quality cork Evaluated by the homogeneity of the cork, aspecto da barriga and aspecto das costas which are an association of different features. Varies between 1st to 6th and refugo where 1st is the best, 6th the worst and refugo even worst. Cork quality bud budset Budset BS_score Assessment of the budset level Cork defects - Transversal section protocol Defects are quantified in the two transversal of 20 × 20 cm boards cut from the previous 30 × 30 cm boiled planks, and also in four strips of 20 × 1 cm (obtained from the same 30 × 30 cm samples), corresponding to transversal surfaces (two strips for each surface). Each of the four faces of the 20 × 20 cm boards and the two faces of the 20 × 1 cm strips were photographed with a camera (10 mega pixels resolution). The defect areas were measured by image analysis, defining the limiting color threshold by visual inspection, using the Leica QWin software (V3.X—Leica Microsystems, Germany). Lengths were calibrated using a calibration ruler. The two types of defects were measured separately: cork porosity and nail inclusions. allele NbA Assessment of alleles quantity in the population quantity Alleles quantity Hour Roots were cleaned with tap water and adventitious roots were counted, sampled and their length measured. Dry mass was measured on fine, main and adventitious roots, separately, and on leaves and stems. Dry weight was determined after drying plant material at 70°C (until a constant weight was achieved). Shoot/Root dry weight protocol Lobe width ratio lamina LWR lobe Lobe width ratio leaf 3 carene content molecule content 3 carene content 3Carene Assessment of the date when 60% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_66 evaluation Assessment of the date when most leaf or mixed buds began to swell BBCH_01 evaluation polyphenols Chemical composition in polysacharide Sacharides_CC Polysacharide composition cork Blossoming scoring scale leaf LWC Leaf water content water content Amount of water in leaves BBCH_39 evaluation Assessment of the date when shoots reached 90% of their final size (deducted a posteriori) IRD branch Shoot diameter increase Shoot diameter increase diameter increase Annual increase Annual increase ACC Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 20% of the crown. For pines: 20% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 20% of buds with open-brushed needles. BBCH_12 evaluation a.humulene leaf molecule content Alpha humulene content Alpha humulene content g Blossoming BBCH scoring scale Relative cover protocol Plant and rock covers are assessed relatively to each other (as if seen from above) in the 10x10 m virtual plot around the tree and with a predefined scoring scale. As the estimations are relatives, the total of the two must be 100%. Assessment of the date when leaves are coming out of their bud. For broadleaves: the first leaves are spread on about 70% of the crown. For pines: 70% of very elongated buds with first needles coming out or out of the sheath but still tight, as stuck between them. For other conifers: 70% of buds with open-brushed needles. BBCH_17 evaluation plant Forking index FO_index forking index Combination of the forking position and the number of forks, the highest index being for non-forking trees and for trees with a lower number of forks at a higher position Flexuosity scoring scale on 5 Assessment of double feet quantity Double feet quantity quantity DP double feet Assessment of epicormics quantity. These formations are appearing on trunks or master branches surfaces of living trees, resulting from buds repelled by cambial growth at the periphery on the trunk. epicormic Epis Epicormic quantity quantity Half-day Wood axial parenchyma thickness WAP-t axial parenchyma Wood axial parenchyma thickness thickness Assessment of the date when 70% of flowers are sexually mature. For flowers with petals: petals are spread out and stamens release pollen. For male flowers in catkins: stamens are visible and release pollen. Other male flowers: stamens are visible and release pollen. BBCH_67 evaluation BBCH_97 evaluation Assessment of the date when 70% of the foliage turned color (color range depending) or fell quantity NBBRM Assessment of the quantity of branches of diameter approximately equal or greater than the trunk diameter Master branches quantity master branche Observation of the fork presence or absence. If the fork is gone and not transformed into a large branch, the value will be 0. If the fork is gone but transformed into a large branch, the value will be 1. If the fork is still present, its height from tree collar must be measured and the value will be the fork height. Fork height protocol Maximal meteo value The maximum value of a list of measured meteo values Measurement of consumed leaf disk area (image analysis) based on feeding multiple choice bioassay in laboratory conditions (boxes of 48 genotypes x 20 replicates). Comsumed leaf protocol The minimum value of a list of measured or computed values Minimal value Branching habit scoring scale None Computation per gram of protein Assessment of the date when at least 10% of the bud burst. Leaves appear between the scales. In pines, the bud lengthens and the needles remain inside their sheath which takes a silver tint; we see the green base of the needles. In other conifers, the needles begin to be visible. BBCH_06 evaluation Leaf_An_curve Leaf photosynthesis light response curve Leaf photosynthesis light response curve Calculation of the cumulative value of a series of measured or computed values Cumulative value Buds at the terminal cluster Number of buds at the terminal cluster number TB bud Defoliation scoring scale on 5 Numerical unknown - 1 decimal stem lesion Lesion length (longitudinal extent) of a canker lesion, an area of dead tissue which grow slowly and is caused by bacteria or fungus Canker lesion length Canker_LL Slenderness protocol The slenderness of a tree is calculated by dividing its total height by its diameter at 1.30 m. Note that both values must be measured with the same unit. Precocity scoring scale BBCH_80 evaluation Assessment of the date when the first fruits of the crown are mature (has changed color or is dried and dehiscent or has fallen) leaf protein content SPC Soluble protein content in leaves Leaf soluble protein content ring width CR-w Cork ring width Cork ring width cork Budflush scoring scale on 3 Earlywood density Assessment of earlywood density, the softer more porous portion of an annual ring of wood that develops early in the growing season earlywood wood BI Sex scoring scale Shape scoring scale Calculation of the medium of a series of measured or computed values Medium value soil Slope angle at the location of the tree Individual slope slope slope Senescence BBCH scoring scale Photosystem II operating efficiency AnII_Ef photosystem II leaf Photosystem II operating efficiency None Pore lenght protocol gC stomatal conductance Stomatal conductance, the rate of passage of carbon dioxide (CO2) entering through the stomata of a leaf leaf Stomatal conductance to CO2 Calendar year Enzymatic activity of phosphoenolpyruvate carboxylase Enzymatic activity of phosphoenolpyruvate carboxylase PEPc leaf enzymatic activity Visual assessment of the status of terminal apex with a reference scoring scale Budset protocol molecule content Beta myrcene content b.myrcene leaf Beta myrcene content Measured with a pole graduated in centimeters Pole protocol Survival state scoring scale µmol.m-2.s-1 leaf Terpinolene content Terpinolene molecule content Terpinolene content height Height increment IH plant Height increase by the growth of the tree main stem Assessment of the date when 80% of the crown fruits are mature (has changed color or is dried and dehiscent or has fallen) BBCH_88 evaluation Variance Calculation of the variance of a series of measured or computed values Epicormic bud quantity epicormic bud LBD quantity Assessment of epicormic buds quantity, a dormant/latent bud having reached the bark as its growth has been delayed for a rather long time scale_of Tolerance tolerance plant Rust tolerance coefficient measured by comparing the growing values (CIR, HT, Vol) on treated and untreated plants Tol volume Epicormic branches volume epicormic branche Assessment of the volume of epicormic branches vEpiBC Whorl defects default Number of whorls whith 1 default (fork, ramicorn…). A whorl or verticil is an arrangement of at least 3 sepals, petals, leaves, stipules or branches that radiate from a single point and surround or wrap around the stem. DEF_V whorl Percentage venation protocol None RA ramicorn quantity Assessment of the ramicorn quantity Ramicorn quantity BBCH_75 evaluation Assessment of the date when 50% of the fruits reached their usual maximum size, but did not changed color yet Competition scoring scale surface LS Leaf surface leaf Leaf surface Assessment of the date when the majority of floral buds have emerged from the buds but are closed. For flowers with petals: the majority of flower buds have emerged from the buds and are still closed, but the colour of the petals is visible. For male flowers in catkins: the catkins are at the end of lengthening, the scales begin to move apart. For other flowers: stamens begin to be visible. BBCH_55 evaluation plant sex Sex determination SEX Determination of the tree sex Measured from soil to the first branches of the canopy Trunk height protocol mmol H2O m-2 s-1 BC color cork Color of the cork plank which adderes to the tree trunk Inner plank surface color quality Woodpecker cork Woodpecker status The woodpecker (Dendrocopus minor) that in pursuit of the larvae of the cobrilha also perforates often the planks. BBCH_03 evaluation Assessment of the date when most leaf or mixed buds have finished swelling and are ready to burst. For some species, the scales may have changed color. Calliper - largest branch protocol Measured below the largest branch of the tree with a calliper graduated in millimeters damages Game damage Assessment of game damages GIB stem Neighbor distance protocol Measure of the distance between the observed tree and its targeted neighbor Needles coloration scoring scale Leaf counting protocol Counting manualy the number of leaves longer than 2 cm on the plant Assessment of the date when 10% of the fruits reached their usual maximum size, but did not changed color yet BBCH_71 evaluation CNL protocol Notation of the date in cumulative night lentgh after July 1st that the observed score is reached for the first time chlorophyll content Chlorophyll a content in leaf green tissue Chlorophyll a Chl a leaf Drought damages scoring scale Drought defects scoring scale SLA protocol Ratio of the leaf area, measured by image analysis, per the leaf dried mass (cm2/g) Forking index protocol Combination of the forking position and the number of forks Suberin Trihydroxyoctadecanoic content suberin content cork Suberin Trihydroxyoctadecanoic content Cork chemical composition in suberin monomores (long-chain alfa, omega-bifunctional fatty acids): Trihydroxyoctadecanoic acid Cork Porosity protocol Image acquisition of the two radial, two transversal and one tangential sections was made through scanning at a minimum resolution of 300 dpi. Images were uploaded and then analysed using ImageProPlus1(Media Cybernetics, USA) image-processing software. BBCH_30 evaluation Assessment of the date when shoots start to growth Assessed by the average of 2 perpendicular diameter measurements across the crown, with the first measurement made along the longest axis of the crown from one edge to the opposite edge. Crown size protocol Measured with a calliper graduated in millimeters Calliper protocol BBCH_72 evaluation Assessment of the date when 20% of the fruits reached their usual maximum size, but did not changed color yet m2.MPa-1.s-1 Crown scoring scale BBCH_00 evaluation Assessment of the date when all buds are dormants Leaf coloration scoring scale None Cork age protocol Assessment according to the objectives of the scientific protocol Thinning protocol Assessment of the date when 40% of the fruits reached their usual maximum size, but did not changed color yet BBCH_74 evaluation Assessment of the date when shoots reached 30% of their final size (deducted a posteriori) BBCH_33 evaluation variable_of